YRC Public Data Repository - Protein Structure Prediction

Protein:	YJH2_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	143 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJH2_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|49071580, gi\|... - gi\|71013530\|ref\|XP_758611.1\| hypothetical protein UM02464.1 [Ustilago maydis 521], ref\|XP_400079.1\| ...	137.0	[0..12]	[139..789]
gi\|42550285, gi\|... - gi\|46127791\|ref\|XP_388449.1\| hypothetical protein FG08273.1 [Gibberella zeae PH-1], gi\|42550285\|gb\|E...	116.0	[0..32]	[141..99]
gi\|145015314, gi... - gi\|39968885\|ref\|XP_365833.1\| hypothetical protein MGG_10053 [Magnaporthe grisea 70-15], gb\|EAA49889....	113.0	[0..26]	[131..124]
gi\|109475224 - gi\|109475224\|ref\|XP_001069267.1\| PREDICTED: similar to CG5946-PB, isoform B [Rattus norvegicus]	110.0	[0..23]	[142..25]
gi\|13435789 - gi\|13435789\|gb\|AAH04750.1\| Cyb5rl protein [Mus musculus]	110.0	[0..50]	[142..18]
gi\|45201310, gi\|... - gi\|45201310\|ref\|NP_986880.1\| AGR214Cp [Ashbya gossypii ATCC 10895], gi\|44986164\|gb\|AAS54704.1\| AGR21... gi\|44986164 - gi\|44986164\|gb\|AAS54704.1\| AGR214Cp [Ashbya gossypii ATCC 10895]	109.0	[0..32]	[126..106]
YP107_YEAST - UPF0651 protein YPL107W, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=Y... YPL107W - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to mi...	108.0	[0..32]	[105..55]
orf19.12069, orf... - orf19.4600 CGDID:CAL0003579 Assembly 19, Contig19-10212 (75114, 75821) CDS, translated using codon t... gi\|238881646 - gi\|238881646\|gb\|EEQ45284.1\| conserved hypothetical protein [Candida albicans WO-1] gi\|68466380, gi\|... - gi\|68466380\|ref\|XP_722672.1\| hypothetical protein CaO19.4600 [Candida albicans SC5314], gi\|68466085\|...	107.0	[0..32]	[138..93]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLTLFKELL KQPKPKFHFE IEPNVSFLAV EEGPASLRSY SIGNVSRIYD GIRVPPKPEE  60
   61 PLNCCQSGCA ICVWDVYADD LEEYNRARRK AKRHYLDKHL PVPPDLAKVS LKETSSLEEL 120
  121 PPQLKAFVLL EKRLMKDKQS KNN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits