| Protein: | gi|19113185 |
| Organism: | Schizosaccharomyces pombe 972h- |
| Length: | 1107 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|19113185.
| Description | E-value | Query Range |
Subject Range |
|
|
714.0 | [0..3] | [1100..35] |
|
|
698.0 | [0..3] | [1100..17] |
|
|
688.0 | [0..9] | [1100..26] |
|
|
688.0 | [0..9] | [1100..26] |
|
|
680.0 | [0..3] | [1100..25] |
|
|
677.0 | [0..1] | [1107..1] |
|
Region A: Residues: [1-879] |
1 11 21 31 41 51
| | | | | |
1 MEEEESLEGI ISIDESLITS RLSQILDDVL DDRSSSHSVE KLKDVAVKYL QFCQFQPTLL 60
61 DKLLSKYVPN LASYLLKVKN IGKCNSITVI LYQFCKIRGY KAVRVLFPVG VQYIKELYTL 120
121 LNESSNNTWH FHYIVLLWLS QALNTPFPLN SLDDSLDVKK TIYTIAIKYL ENSGIDKEAS 180
181 CLVLSRLFSR DDGLDLLLGF LHHCESSWFK RSIFYKIGCL FSLSSFLKIC PRNDCLQTVD 240
241 VAFQFLNVAR EDLVGQENSA LRKLLCKCYT RLGIVLLPVN SSPNWKYSIS NPDSFFQLPD 300
301 DSNEEVHIYL EVIVDFLLSS VSDIDSFVRW SAAKGLAKII SRLPWNLAEQ VIDAIIELMT 360
361 ENMFLNPIEN TVNISITSPL VWHGAILFFA KLAGAGLIKY SKCLHILPLI EVGLSYEVRY 420
421 GTRVTGQSIR DASCYFVWSF YHCYSKSAIE GLQTNLILCL LQTVLFDNEI NVRRAATAAL 480
481 FEVIGRHASI PDGLSLISHI NYVSVTDISN CYGDLCMKVA HFPQFRSCVF QRLFTNLQHW 540
541 DVKVQQLSAF SLRQLSIKYP KELSIYLPPI LDYLSVGNAD FIFGYTIGLA SIIGGFLSIS 600
601 FPFDINRIHD LLSHKNLLSL KKFSRQQQTK IILGILKGIQ QIFANDIRVD RAFFSEAFSV 660
661 IIAAIDLQEE TIIKDISDAY SVLVKFDDME ETLEVLLDYI RKCSTSKEAR IVYIILQNLP 720
721 NISFRYQKKI CKLLLDIYPQ LHSIDYQAPV ANALQNIIPF TYEKTESIEE FVKELLQVCS 780
781 NYLTDTRGDV GSWIRKPAMK AISSLLVKDS SGKKLSEDIV WCCISYIIRQ TFDKIDSLRG 840
841 LAYQALEQIR VHYLIRRCEA LTNIINRISF RNNPNMDGE
|
| Detection Method: |  |
| Confidence: | 76.69897 |
| Match: | 1qbkB |
| Description: | Karyopherin beta2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.91891696274037 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 2.61566088685247 | bayes_pls_golite062009 |
| actin binding | 1.76244772281676 | bayes_pls_golite062009 |
| protein binding | 1.75981610748679 | bayes_pls_golite062009 |
| nucleic acid binding | 1.13208464017585 | bayes_pls_golite062009 |
| structural molecule activity | 0.440301695287117 | bayes_pls_golite062009 |
| DNA binding | 0.171056781378569 | bayes_pls_golite062009 |
|
Region A: Residues: [880-1016] |
1 11 21 31 41 51
| | | | | |
1 VLNELNISLL EIPNLRLQAF YGITVFTADG FGSDLAVKCF EFYLSYVYQL EDSFKKSNSR 60
61 YGKRDLLQLY IDILSSEDEI ARFYFPIMKS FTSLLAYGCF TDFQNVKGMS KAIFIVQRRA 120
121 LTCKSPGGLS AILELYR
|
| Detection Method: | |
| Confidence: | 27.30103 |
| Match: | 1uklA |
| Description: | Crystal structure of Importin-beta and SREBP-2 complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1017-1107] |
1 11 21 31 41 51
| | | | | |
1 TLFLSKNELL RHHALKYTAN LLLNPIEKVR YQAADTLLYA KSIGLLTFLP NELNQKLLTL 60
61 DWFVPVSQNA TFVKQLRNII QKQIDKLIAD R
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.823 | a.64.1 | Saposin |
