YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|19113076
Organism:	Schizosaccharomyces pombe 972h-
Length:	354 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|19113076.

Description	E-value	Query Range	Subject Range
zuo1 - zuotin ZUO1_SCHPO - Zuotin OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=zuo1 PE=1 SV=2	130.0	[0..1]	[354..89]
gi\|115387695, gi... - gi\|115387695\|ref\|XP_001211353.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	127.0	[0..1]	[328..93]
gi\|114615258 - gi\|114615258\|ref\|XP_001159586.1\| PREDICTED: zuotin related factor 1 isoform 1 [Pan troglodytes]	118.0	[0..1]	[350..80]
gi\|220946754 - gi\|220946754\|gb\|ACL85920.1\| CG10565-PA [synthetic construct] FBpp0293954, CG1... - This gene is referred to in FlyBase by the symbol Dmel\CG10565 (CG10565, FBgn0037051). It is a prote...	116.0	[0..1]	[347..68]
gi\|119185070, gi... - gi\|90302143\|gb\|EAS31774.1\| hypothetical protein CIMG_07253 [Coccidioides immitis RS], gi\|119185070\|r...	116.0	[0..7]	[303..466]
ZRF1_MOUSE - (P54103) Zuotin-related factor 1	112.0	[0..1]	[349..80]
gi\|50762236 - gi\|50762236\|ref\|XP_424983.1\| PREDICTED: similar to DnaJ homolog subfamily B member 5 (Heat shock pro...	111.0	[0..8]	[216..218]
gi\|85118153 - gi\|85118153\|ref\|XP_965395.1\| zuotin gi\|32419505, gi\|... - gi\|9367275\|emb\|CAB97292.1\| probable zuotin [Neurospora crassa], gi\|32419505\|ref\|XP_330196.1\| hypothe...	111.0	[0..1]	[352..93]
DNJC2_BOVIN - DnaJ homolog subfamily C member 2 OS=Bos taurus GN=DNAJC2 PE=2 SV=1	111.0	[0..1]	[350..80]

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Predicted Domain #1

Region A:
Residues: [1-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPKEWKQQDH YAVLGLSKYR YKADTEQIKK AHLKKVLKHH PDKKAASGNI NDDSFFKCIQ  60
   61 KAYEILSDPV RRRQFDSVDE NADVEPPEST TKETFFELWT PVFESEARFS KKQPVPSLGT 120
  121 IESTRAEVDN FYNFWYNFDS WRSFEYLDKD IPD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.522879
Match:	1xblA
Description:	NMR STRUCTURE OF THE J-DOMAIN (RESIDUES 2-76) IN THE ESCHERICHIA COLI N-TERMINAL FRAGMENT (RESIDUES 2-108) OF THE MOLECULAR CHAPERONE DNAJ, 20 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [154-354]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGESRDNKRF QEKKNRSERQ KNKARDNARL RNLVDTALAS DPRIKLFKEQ EKAAKAARKW  60
   61 EREAGAREAA AAAQKKKEEE ERRAAEEAAA KASAAAANKK AKEDKKKAQK RDKKVVKNAL 120
  121 KDFNYFSATD VPSAEHVDSV LKDVDVIMSK LGEGELGQLA ADINAEKAAG AASVQAVFDK 180
  181 FAKMFIERGS MSSADVVFFA Q

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.42
Match:	1rh1A
Description:	crystal structure of the cytotoxic bacterial protein colicin B at 2.5 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits