YRC Public Data Repository - Protein Structure Prediction

Protein:	PKR1_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	132 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PKR1_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|40745785, gi\|... - gi\|67523305\|ref\|XP_659713.1\| hypothetical protein AN2109.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	165.0	[0..2]	[132..3]
gi\|151945825 - gi\|151945825\|gb\|EDN64057.1\| V-ATPase Assembly Factor [Saccharomyces cerevisiae YJM789] PKR1_YEAST - V-type ATPase assembly factor PKR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PKR1 ... PKR1 - V-ATPase assembly factor, functions with other V-ATPase assembly factors in the ER to efficiently as...	164.0	[0..2]	[118..3]
gi\|38104410, gi\|... - gi\|39945516\|ref\|XP_362295.1\| hypothetical protein MGG_04740 [Magnaporthe grisea 70-15], gb\|EAA50981....	160.0	[0..3]	[115..4]
gi\|28926087, gi\|... - gi\|32408409\|ref\|XP_324686.1\| hypothetical protein [Neurospora crassa], gi\|28926087\|gb\|EAA35074.1\| co... gi\|85112254 - gi\|85112254\|ref\|XP_964310.1\| hypothetical protein NCU00506 [Neurospora crassa OR74A]	157.0	[0..2]	[125..3]
gi\|111059234 - gi\|111059234\|gb\|EAT80354.1\| hypothetical protein SNOG_11942 [Phaeosphaeria nodorum SN15]	138.0	[0..2]	[132..3]
gi\|50425275, gi\|... - gi\|50425275\|ref\|XP_461229.1\| hypothetical protein DEHA0F21582g [Debaryomyces hansenii CBS767], gi\|49... gi\|49656898 - gi\|49656898\|emb\|CAG89617.1\| DEHA2F20306p [Debaryomyces hansenii]	131.0	[0..1]	[105..1]
gi\|88181854, gi\|... - gi\|88181854\|gb\|EAQ89322.1\| hypothetical protein CHGG_05941 [Chaetomium globosum CBS 148.51], gi\|1161...	128.0	[0..2]	[116..3]
gi\|42546347, gi\|... - gi\|46108324\|ref\|XP_381220.1\| hypothetical protein FG01044.1 [Gibberella zeae PH-1], gi\|42546347\|gb\|E...	128.0	[0..2]	[108..3]
gi\|49527697 - gi\|49527697\|emb\|CAG61346.1\| unnamed protein product [Candida glabrata] gi\|50291905, gi\|... - gi\|50291905\|ref\|XP_448385.1\| unnamed protein product [Candida glabrata], gi\|49527697\|emb\|CAG61346.1\|...	110.0	[0..1]	[83..1]
gi\|50311685, gi\|... - gi\|50311685\|ref\|XP_455869.1\| unnamed protein product [Kluyveromyces lactis], gi\|49645005\|emb\|CAG9857... gi\|49645005 - gi\|49645005\|emb\|CAG98577.1\| KLLA0F17567p [Kluyveromyces lactis]	110.0	[0..2]	[113..3]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYWVELWES IFTPGVTPVL AKSAHVACGA LVAVFLGLYI GTKSIHCLIL FFLAICLWLS  60
   61 LTWFLVELAH ARVNNDLQMS SQSANKNDDN SNNQNPSNNK EMSDKESDSA TTTQTFSVPE 120
  121 ELLRARTTAN NS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	44.251812
Match:	PF08636.1
Description:	No description for PF08636.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits