YRC Public Data Repository - Protein Structure Prediction

Protein:	RM35_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	370 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RM35_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|32414865, gi\|... - gi\|32414865\|ref\|XP_327912.1\| hypothetical protein [Neurospora crassa], gi\|28917826\|gb\|EAA27514.1\| hy... gi\|85081594 - gi\|85081594\|ref\|XP_956750.1\| hypothetical protein [Neurospora crassa OR74A]	276.0	[0..79]	[368..97]
gi\|38566839 - gi\|38566839\|emb\|CAE76145.1\| related to ribosomal protein YmL35 [Neurospora crassa]	275.0	[0..79]	[368..73]
gi\|46130894, gi\|... - gi\|46130894\|ref\|XP_389178.1\| hypothetical protein FG09002.1 [Gibberella zeae PH-1], gi\|42554517\|gb\|E...	258.0	[0..78]	[368..97]
gi\|38103565, gi\|... - gi\|39943992\|ref\|XP_361533.1\| hypothetical protein MGG_04007 [Magnaporthe grisea 70-15], gb\|EAA50248....	245.0	[0..78]	[367..147]
gi\|40739051, gi\|... - gi\|67541344\|ref\|XP_664446.1\| hypothetical protein AN6842.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	242.0	[0..78]	[369..105]
RM35_YEAST - 54S ribosomal protein L35, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN... gi\|151942298 - gi\|151942298\|gb\|EDN60654.1\| YmL35 [Saccharomyces cerevisiae YJM789] MRPL35 - Mitochondrial ribosomal protein of the large subunit	241.0	[0..72]	[355..49]
gi\|90298442, gi\|... - gi\|90298442\|gb\|EAS28073.1\| hypothetical protein CIMG_09277 [Coccidioides immitis RS], gi\|119174601\|r...	239.0	[0..78]	[369..106]
gi\|21315011 - gi\|21315011\|gb\|AAH30739.1\| Mitochondrial ribosomal protein L38 [Mus musculus]	237.0	[0..78]	[369..18]
gi\|114195250, gi... - gi\|115387321\|ref\|XP_001211166.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	234.0	[0..78]	[369..106]

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Predicted Domain #1

Region A:
Residues: [1-165]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDLFQLTCL TSTVSISNFI LYNRKYRKSC ALAFLTLRYT LLCYSIPIHI HTVNYLAFTI  60
   61 ARMKRVWPRI PTISNVCRAR SIYSAAQENA YRSSVKLIQE YSEKVHKKLQ AKLLENPSET 120
  121 SPEIERLQVL SQINLPEVRS KFHKKEIDYT NPVFLYMLKQ QWEDY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.699	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.610	N/A	N/A	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.605	N/A	N/A	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore
View	Download	0.486	N/A	N/A	a.26.1	4-helical cytokines
View	Download	0.476	N/A	N/A	a.24.10	Histidine-containing phosphotransfer domain, HPT domain

Predicted Domain #2

Region A:
Residues: [166-370]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QKLLLLQRLE QMKVIKDSGI GSFSPSVDVQ LGFNPENNDS ITPGTILPST VTVKTPWLSV  60
   61 LPFNCKKNHY SVITLDLDVP NYETNRFETH CNWLLTNIPI EASKRVPIDT SKAFFQYRPP 120
  121 IVHRGEDKHR ILTLVLRQKS SSISIPSNAL VRERFDLSEF CSIYDLEPVG AHLWRSGWDS 180
  181 DAVALLSKHP SVHEYRDIRV ERIPA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.522879
Match:	1wkoA
Description:	terminal flower 1 (tfl1) from arabidopsis thaliana
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits