YRC Public Data Repository - Protein Structure Prediction

Protein:	GPN1_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	367 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GPN1_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|151945139 - gi\|151945139\|gb\|EDN63390.1\| nucleolar preribosomal associated protein [Saccharomyces cerevisiae YJM7... NPA3 - Essential, conserved, cytoplasmic ATPase; phosphorylated by the Pcl1p-Pho85p kinase complex GPN1_YEAST - GPN-loop GTPase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NPA3 PE=1 SV=1	202.0	[0..6]	[366..1]
gi\|49527555 - gi\|49527555\|emb\|CAG61204.1\| unnamed protein product [Candida glabrata] gi\|49527555, gi\|... - gi\|50291621\|ref\|XP_448243.1\| unnamed protein product [Candida glabrata], gi\|49527555\|emb\|CAG61204.1\|...	196.0	[0..11]	[367..6]
gi\|44984975, gi\|... - gi\|45198946\|ref\|NP_985975.1\| AFR428Cp [Ashbya gossypii ATCC 10895], gi\|44984975\|gb\|AAS53799.1\| AFR42... gi\|44984975 - gi\|44984975\|gb\|AAS53799.1\| AFR428Cp [Ashbya gossypii ATCC 10895]	194.0	[0..11]	[367..4]
gi\|49641292, gi\|... - gi\|50304421\|ref\|XP_452160.1\| unnamed protein product [Kluyveromyces lactis], gi\|49641292\|emb\|CAH0255... gi\|49641292 - gi\|49641292\|emb\|CAH02553.1\| KLLA0B14124p [Kluyveromyces lactis]	187.0	[0..5]	[367..40]
gi\|49656955, gi\|... - gi\|50425385\|ref\|XP_461286.1\| hypothetical protein DEHA0F23023g [Debaryomyces hansenii CBS767], gi\|49... gi\|49656955 - gi\|49656955\|emb\|CAG89685.1\| DEHA2F21670p [Debaryomyces hansenii]	186.0	[0..6]	[367..1]
orf19.13821 - orf19.6463 CGDID:CAL0002253 Assembly 19, Contig19-20248 (24576, 25853) CDS, translated using codon t... gi\|68470071, gi\|... - gi\|68470071\|ref\|XP_720797.1\| hypothetical protein CaO19.13821 [Candida albicans SC5314], gi\|46442683...	185.0	[0..4]	[367..38]
gi\|57226648, gi\|... - gi\|58266518\|ref\|XP_570415.1\| aerobic respiration-related protein [Cryptococcus neoformans var. neofo... gi\|134110558, gi... - gi\|50258774\|gb\|EAL21459.1\| hypothetical protein CNBD1540 [Cryptococcus neoformans var. neoformans B-...	175.0	[0..5]	[313..22]
gi\|49096426, gi\|... - gi\|67538732\|ref\|XP_663140.1\| hypothetical protein AN5536.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	174.0	[0..4]	[367..1]
gi\|68387058 - gi\|68387058\|ref\|XP_683624.1\| PREDICTED: similar to XPA binding protein 1 isoform 1 [Danio rerio]	174.0	[0..7]	[317..43]

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Predicted Domain #1

Region A:
Residues: [1-74]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDKEKKPCA IIVVGMAGSG KTTFMQQLNA HLHSKNKPPY ILNLDPAVRN LPYEANIDIR  60
   61 DTINYKEVMK QYNL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.69897
Match:	1yr6A
Description:	PAB0955 crystal structure : a GTPase in Apo form from Pyrococcus abyssi
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [75-367]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPNGGIMTSL NLFVTKFDQV LKILEKRAPT VDHILIDTPG QIEIFQWSAS GSIICDTLAS  60
   61 SWPTCIAYVV DTPRATSTST WMSSMLYACS MLYKAKLPLI IVYNKCDVQD SEFAKKWMTD 120
  121 FEEFQQAVTK DEGMSSEGAT SGYMGSLVNS MSLMLEEFYR HLDFVSCSSV TGEGMDDFLE 180
  181 AVKAKVKEYE EEYVPEMERM KEIQRQTKER QKEAQLSKLM KDMHVSKDKE DVGLTVSDAE 240
  241 DEYNGELVDP DEDDGLTAED REDMIKQYRV ALGISDDISD EKLLEMLTER MKQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.69897
Match:	2hcjB
Description:	No description for 2hcjB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits