YRC Public Data Repository - Protein Structure Prediction

Protein:	YL88_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	590 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YL88_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|13384201 - gi\|13384201\|gb\|AAK21311.1\| myosin subfamily XI heavy chain [Petroselinum crispum]	447.0	[0..8]	[505..994]
gi\|29170491 - gi\|29170491\|dbj\|BAC66162.1\| myosin XI [Nicotiana tabacum]	434.0	[0..8]	[505..853]
gi\|7243765 - gi\|7243765\|gb\|AAF43440.1\|AF233886_1 unconventional myosin XI [Vallisneria natans] gi\|7243765 - gi\|7243765\|gb\|AAF43440.1\| unconventional myosin XI [Vallisneria gigantea]	433.0	[0..8]	[505..995]
gi\|7441408, gi\|2... - pir\|\|T14278 myosin-like protein my4 - common sunflower, gi\|2444178\|gb\|AAB71528.1\| unconventional myo...	428.0	[0..8]	[505..994]
gi\|62319885 - gi\|62319885\|dbj\|BAD93941.1\| myosin heavy chain - like protein [Arabidopsis thaliana]	421.0	[0..8]	[505..63]
gi\|46123231, gi\|... - gi\|46123231\|ref\|XP_386169.1\| hypothetical protein FG05993.1 [Gibberella zeae PH-1], gi\|42552795\|gb\|E...	415.0	[0..97]	[556..706]
gi\|39977635, gi\|... - gi\|39977635\|ref\|XP_370205.1\| hypothetical protein MG06702.4 [Magnaporthe grisea 70-15], gb\|EAA55045....	408.0	[0..71]	[554..652]
gi\|47848191, gi\|... - gi\|50915880\|ref\|XP_468404.1\| putative myosin subfamily XI heavy chain [Oryza sativa (japonica cultiv...	405.0	[0..8]	[505..1013]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHTYCNTETV QLYRFIAMDQ WSDNKDAIGM LSESLKEKVV TNEIAPALKE VKNHKYNFET  60
   61 EILNTGNVWN NDSKNGESGS AFGLDKIFQS SDSGNIAEGL ELDLGNI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [108-590]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLETHNLESP AWKHADYDGV AASVNDNNND WKFFVFDERE IDSMLQLFVR DFRADKPALR  60
   61 LAPSKLFYLA SRFAFFYMPK EKELGTVLLN AFLCEVNQVT QQHPNDMVLC VQWLANVSLL 120
  121 LFYLKKDNKL DDLTVDIQNR CSELMNSLYI TICQDAMRRM NENLEEGMVK YTGIQGLEDI 180
  181 LRSRSWNLLR RRPTNDASTS PRSTPSASPR SITKIIASTL HLLEVFYIHP LIRAQCIEQL 240
  241 FSWLGARLFN IVISNKKYLS RAAAMETRFN ISSLEEWSQT NSPKLQKPFD YPDEDLKVDL 300
  301 ISKLLSLVQL LQWLQCLYRL SEDEDPRALQ ETLESLDALN PRQIYTAAKL YRPDITETKV 360
  361 SKTFLKKLDA FHEEKLREKI NSSDKGDVSY EFELLKDETV FSPLKLPTKA QLINAYSYIV 420
  421 SGNGFNEDRK IVFQPHVSNI LIDKLEENGL SMERAELPTS VFEDELQRRE WRPDQEVEEL 480
  481 LST

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.39794
Match:	2f6hX
Description:	Myosin V cargo binding domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits