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View Structure Prediction Details

Protein: gi|125569579, gi...
Organism: Oryza sativa Japonica Group
Length: 255 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125569579, gi....

Description E-value Query
Range
Subject
Range
gi|21592900 - gi|21592900|gb|AAM64850.1| unknown [Arabidopsis thaliana]
341.0 [0..1] [255..1]
gi|113595759, gi... - gi|52075893|dbj|BAD45839.1| unknown protein [Oryza sativa Japonica Group], gi|215766037|dbj|BAG98265...
312.0 [0..6] [255..10]

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Predicted Domain #1
Region A:
Residues: [1-89]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPEEAEAVL ETIWDLHDKV SDAIHALSRA HFLRAVRRHS KPAEGLVRVK GGDGVDDEAA  60
   61 ALDAVAEEAR SLHAIRAALE DLEDQFECF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.922 a.47.2 t-snare proteins

Predicted Domain #2
Region A:
Residues: [90-143]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LAVQSQQQAE RDISLARLEQ SRIMLAIRLN GHRGVNKKII DEALDFVRNV CHGV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [144-255]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WPSLSINKPA KLGSHSGADS KNANFLGQMV ASSVALARNS FSIKTLGGLL GHTGVLAIGM  60
   61 ITLLQLHWLS SGQQSPSTCR YSYKMISQES SSQFETAMDT RISDLDVFLA RG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle