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View Structure Prediction Details

Protein: gi|125572637, gi...
Organism: Oryza sativa Japonica Group
Length: 546 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125572637, gi....

Description E-value Query
Range
Subject
Range
ROGF5_ARATH - Rop guanine nucleotide exchange factor 5 OS=Arabidopsis thaliana GN=ROPGEF5 PE=2 SV=1
785.0 [0..6] [518..28]

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Predicted Domain #1
Region A:
Residues: [1-466]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSGEEEREA RSEAAFTDSA DGSSSSSDAA SADEWPVTLA APPRKTAACG RVPGAEVVDS  60
   61 SKPHAQKRRA PSSEMEMMKE RFAKLLLGED MSGSGKGVCT ALAIANAITN LCATIFGQLW 120
  121 RLEPLPPEKK AMWRREMGWL LCVSDHIVEL VPTWQSFPDG TRLEVMTSRP RSDLYINLPA 180
  181 LRKLDHMLIE ILDSFRDPEF WYVEQGICAP DCDGSASFRA AFHRRDEKWW LPVPRVPPGG 240
  241 LRDKARKQLQ HKRDCANQIL KAALAINSNA LAEMEVPESY LESLPKNGRA TLGDIIYRYI 300
  301 TSDHFSPECL LDCLDLSTEY QALEIANRVE ASVYVWRRRI AAKPASVLGR ATSGRSSWGM 360
  361 VKDMIIDTEK RELLAERAEG LLICLKQRFP GLTQTSLDMS KIQYNRDVGK SILESYSRVL 420
  421 ESLASNIVAR IDDLLNIDEL NRHAEHFPQG DADCRIACNK AAVPPY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 2ntxA
Description: No description for 2ntxA was found.

Predicted Domain #2
Region A:
Residues: [467-546]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QVPASGTPFV TAYATPSFSP AQLASPSKKE RSPLGAGRRS YSNRGFGAKK ALAIDLVNPE  60
   61 VMGVIISGGK MIDVSTTTEL 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle