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View Structure Prediction Details

Protein: gi|63334145, gi|...
Organism: Vitis vinifera
Length: 740 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|63334145, gi|....

Predicted Domain #1
Region A:
Residues: [1-444]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGAVLVAIA AAIGNFLQGW DNATIAGAIV YIKKELDLES TVEGLVVAMS LIGATLVTTC  60
   61 SGAISDWIGR RPMLIVSSML YFISGLIMLW SPNVYVLLIA RLLDGFGIGL AVTLVPIYIS 120
  121 ETAPADIRGS LNTLPQFTGS GGMFLSYCMV FGMSLLSSPS WRLMLGILSI PSLLYFALTV 180
  181 FYLPESPRWL VSKGRMVEAK KVLQRLRGRE DVSAEMALLV EGLGIGGETS IEEYIIGPTG 240
  241 ELTEDQDPDA VKDQIKLYGP EAGLSWVAKP VPGGQSTLSL VSRQGSLATQ TLPLMDPLVT 300
  301 LFGSVHEKLP ETGSMRSMLF PNFGSMFSTA DPQIKTEQWD EESLQREGED YASDGGGDSD 360
  361 HDLQSPLISR QTSSMEKDMV PPPSHSSIMS MRRHSSLMQG TAGEAAGGMG IGGGWQLAWK 420
  421 WSEREGEDGK KEGGFKRIYL HEEG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.221849
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [445-518]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPGSRRGSLV SLPGGDVPAE GDYIQAAALV SQPALYSKEL MDQDPVGPAM VHPAETASRG  60
   61 PMWAALLEPG VKHA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [519-740]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LFVGAGIQIL QQFSGINGVL YYTPQILEEA GVEVLLESLG LGTESASFLI SAFTTLLMLP  60
   61 CIVVAMKLMD IVGRRRLLLT TIPVLIVTLL VLVIGDLVTT TTVIHAAIST ACVIIYFCCF 120
  121 VTAYGPIPNI LCSEIFPTRV RGLCIAICAL VYWIGDIIVT YTLPVMLTSI GLTGIFGIYA 180
  181 VVCVISWVFV FLKVPETKGM PLEVIAEFFA VGARQVTAAK ND

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle