YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|63147392, gi\|...
Organism:	Arabidopsis thaliana
Length:	526 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|63147392, gi|....

Description	E-value	Query Range	Subject Range
gi\|62320640 - gi\|62320640\|dbj\|BAD95306.1\| DNA polymerase epsilon subunit B -like protein [Arabidopsis thaliana]	475.0	[0..1]	[526..1]
gi\|114652887 - gi\|114652887\|ref\|XP_509931.2\| PREDICTED: DNA polymerase epsilon subunit 2 isoform 3 [Pan troglodytes...	458.0	[0..3]	[526..2]
POLE2 - polymerase (DNA directed), epsilon 2 (p59 subunit)	456.0	[0..3]	[526..2]
gi\|76627676 - gi\|76627676\|ref\|XP_596849.2\| PREDICTED: similar to DNA polymerase epsilon small subunit isoform 1 [B...	456.0	[0..3]	[526..2]
gi\|73962858 - gi\|73962858\|ref\|XP_851216.1\| PREDICTED: similar to DNA polymerase epsilon subunit 2 isoform 1 [Canis...	452.0	[0..3]	[526..2]
gi\|147907164, gi... - gi\|9988418\|dbj\|BAB12726.1\| DNA polymerase epsilon subunit B [Xenopus laevis], gi\|66912072\|gb\|AAH9777...	452.0	[0..3]	[526..2]
DPOE2_MOUSE - DNA polymerase epsilon subunit 2 OS=Mus musculus GN=Pole2 PE=2 SV=2	450.0	[0..3]	[526..2]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTSQKRKK IQKKFKNRGY NLKFDALDEI LVFADQFPDD DDGEAIDLLL DNLQETHKSS  60
   61 TVDAESVRGL INRLLGAHNA PEEPTTSASS LAIIDAFLVP KFGYDSVKKK FNEHTSSLPI 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.154902
Match:	2v6zM
Description:	No description for 2v6zM was found.

Predicted Domain #2

Region A:
Residues: [121-289]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HGEASAKTAL YRERFMLLSQ RVSRAEHFSR PAFDAEMSQF ENNEISSIQS LISQRGRKWV  60
   61 MGVISQLEDG HFYLEDLSAS VEIDLSKAKI TTGFFTENTI ILAEGEMQVN GIFQVITCGF 120
  121 PPLEDRDKTL KAHSEYDFFG GGTLTKEEMI KLADLERQAV NDTFVILSD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [290-434]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IWLDDEEVMR KLETVLDGFE SVETVPSLFV FMGNFCSRPC NLSFGSYSSL REQFGKLGRM  60
   61 IGNHPRLKEN SRFLFIPGPE DAGPSTVLPR CALPKYLTEE LRNIIPNAIF SSNPCRVKFY 120
  121 NQEIVFFRQD LLYRMRRSCL VTPSS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [435-526]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EETNDPFKHL VYTITHQSHL CPLPLMVQPI IWNYDHALRL YPTPHTIVLG DKSEQEVCKF  60
   61 GGTTCFNPGS FSTDSTFVAY RPSTQEVELS AL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits