YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|63147368, gi\|...
Organism:	Arabidopsis thaliana
Length:	241 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|63147368, gi|....

Description	E-value	Query Range	Subject Range
gi\|115931781, gi... - gi\|115931781\|ref\|XP_001179370.1\| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus], gi...	236.0	[0..5]	[235..1]
gi\|62320889 - gi\|62320889\|dbj\|BAD93872.1\| hypothetical protein [Arabidopsis thaliana]	231.0	[0..1]	[241..1]
gi\|125572934, gi... - gi\|57899790\|dbj\|BAD87535.1\| ALM beta-like [Oryza sativa Japonica Group], gi\|215768884\|dbj\|BAH01113.1...	225.0	[0..8]	[240..7]
gi\|220952144 - gi\|220952144\|gb\|ACL88615.1\| CG31938-PA [synthetic construct] Rrp40-PA, FBpp03... - This gene is referred to in FlyBase by the symbol Dmel\Rrp40 (CG31938, FBgn0260648). It is a protein...	221.0	[0..11]	[239..2]
EXOS3_BOVIN - Exosome complex component RRP40 OS=Bos taurus GN=EXOSC3 PE=2 SV=1	219.0	[0..1]	[237..12]
EXOSC3 - exosome component 3 gi\|123982070, gi... - gi\|123996899\|gb\|ABM86051.1\| exosome component 3 [synthetic construct], gi\|123982070\|gb\|ABM82864.1\| e...	218.0	[0..1]	[237..12]
gi\|114624602, gi... - gi\|114624602\|ref\|XP_001170257.1\| PREDICTED: exosome component 3 isoform 2 [Pan troglodytes], gi\|1146...	217.0	[0..1]	[237..12]

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Predicted Domain #1

Region A:
Residues: [1-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAKVSVSPT SLLNQIVVPG DVVLDLSNMN NQTIKLGSGL LQDNDAISAM RAGKLSYSKP  60
   61 NKYWLESSHK RYIPRPDDHV LGIVVDSRAD NFWVDIKGPQ LALLPVLAFE GGTRRNIPKF 120
  121 EVGTLLYLRV VKTNIGMNPE LSCTEASGKA ALFGPLRDGF MFETSTGLSR MLLNSPTRPV 180
  181 IEALGKKLSF EIAVGLNGRV WVNATAPRIV IIVANAIMNS ESLSGTQQRI MVEKLLAIIS 240
  241 D

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.0
Match:	2nn6G
Description:	No description for 2nn6G was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits