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View Structure Prediction Details

Protein: gi|56201807, gi|...
Organism: Oryza sativa Japonica Group
Length: 392 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|56201807, gi|....

Description E-value Query
Range
Subject
Range
gi|9294077, gi|1... - gi|9294077|dbj|BAB02034.1| unnamed protein product [Arabidopsis thaliana], gi|30725644|gb|AAP37844.1...
372.0 [0..4] [385..7]
PLO2_MOUSE, PLOD... - Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 OS=Mus musculus GN=Plod2 PE=2 SV=1, (Q9R0B9) Proco...
327.0 [0..17] [342..425]
PLOD2_RAT - Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 OS=Rattus norvegicus GN=Plod2 PE=2 SV=1
326.0 [0..17] [342..425]
PLOD1_CHICK - Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 OS=Gallus gallus GN=PLOD1 PE=1 SV=1
325.0 [0..17] [342..418]
gi|73990680 - gi|73990680|ref|XP_542822.2| PREDICTED: similar to procollagen-lysine, 2-oxoglutarate 5-dioxygenase ...
324.0 [0..17] [342..433]

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Predicted Domain #1
Region A:
Residues: [1-89]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALDGPAERR DEAQAAMGNG NGVAPPPLRP AGRPSGAPAC ADRRLRLNPN MEHKPQDYSD  60
   61 VRGEYAPAVY SALERHLPPS VLDANREIK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [90-162]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LQLMREVLGH YWPHGERNKV QRHREYRQRI LNHYKPLHKE LYKMRPSSFF LPTFLEAIRT  60
   61 NTEESFRSIM TEP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [163-392]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPGVYSFAML QPNFCEMLLQ EVENFEKWVH TMKFKIMRPN TMNKYGAVLD DFGLEVMLNQ  60
   61 FMEQFIAPMS TVLYPEVGGG TLDTHHAFVV EYGKDRDVEL GFHVDDSEVT LNVCLGKQFS 120
  121 GGELYFRGIR CENHVNSETQ HEEMFDYSHV PGRAVLHRGR HRHGARPTSS GLRINLLLWC 180
  181 RSSVFREMKK YQKDFSGWCG ECKREKKERQ IHAVKATKLA FLRGAGGATI 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.14
Match: 2hbtA
Description: No description for 2hbtA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle