YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|56604186, gi\|...
Organism:	Francisella tularensis subsp. tularensis SCHU S4
Length:	268 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|56604186, gi|....

Description	E-value	Query Range	Subject Range
gi\|67548364, gi\|... - gi\|67548364\|ref\|ZP_00426254.1\| Binding-protein-dependent transport systems inner membrane component ...	7.0E-44	[20..265]	[536..797]
gi\|23100928, gi\|... - gi\|23100928\|ref\|NP_694395.1\| ABC transporter permease [Oceanobacillus iheyensis HTE831], gi\|22779163...	2.0E-37	[32..257]	[185..428]
gi\|89359528, gi\|... - gi\|89359528\|ref\|ZP_01197349.1\| similar to ABC-type spermidine/putrescine transport system permease c...	7.0E-37	[1..258]	[289..552]
gi\|89143900, gi\|... - gi\|89256069\|ref\|YP_513431.1\| polyamine transporter, subunit I, ABC transporter, membrane protein [Fr... gi\|197741997, gi... - gi\|254367404\|ref\|ZP_04983430.1\| polyamine transporter, subunit I, ABC transporter, membrane protein ... gi\|156502082, gi... - gi\|156502082\|ref\|YP_001428147.1\| ABC transporter, permease protein [Francisella tularensis subsp. ho... gi\|89143900\|emb\|... - polyamine transporter, subunit I, ABC transporter, membrane protein [Francisella tularensis subsp. h... gi\|115314546, gi... - gi\|115314546\|ref\|YP_763269.1\| polyamine ABC transporter ATP-binding protein [Francisella tularensis ... gi\|167009283 - gi\|167009283\|ref\|ZP_02274214.1\| ABC transporter, permease protein [Francisella tularensis subsp. hol...	2.0E-36	[1..268]	[1..268]
gi\|42522758, gi\|... - gi\|42522758\|ref\|NP_968138.1\| maltose/maltodextrin transport permease homologue [Bdellovibrio bacteri...	9.0E-35	[4..251]	[451..718]
gi\|10173861, gi\|... - gi\|15613808\|ref\|NP_242111.1\| hypothetical protein BH1245 [Bacillus halodurans C-125], gi\|10173861\|db... gi\|25489748 - pir\|\|E83805 hypothetical protein BH1245 [imported] - Bacillus halodurans (strain C-125)	1.0E-34	[36..257]	[191..430]
gi\|25399373 - pir\|\|E87637 hypothetical protein CC3135 [imported] - Caulobacter crescentus gi\|16127365, gi\|... - gi\|16127365\|ref\|NP_421929.1\| spermidine/putrescine ABC transporter, permease protein [Caulobacter cr...	5.0E-34	[3..259]	[47..303]
gi\|167350339, gi... - gi\|167647909\|ref\|YP_001685572.1\| ornithine carbamoyltransferase [Caulobacter sp. K31], gi\|167350339\|...	7.0E-33	[3..259]	[16..272]
gi\|98976680, gi\|... - gi\|98976680\|gb\|ABF52831.1\| binding-protein-dependent transport systems inner membrane component [Sph...	1.0E-32	[3..259]	[17..272]

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Predicted Domain #1

Region A:
Residues: [1-268]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRFSFSKIM LILDLIFLYI PLIILVVFSF SNSEIINLWG GFTFDWYHEV IHDEDIINAT  60
   61 FTSLKIATIT SAIATILGTI IAYAMTRFKF FRSRSFLYGL VATPLVLPDI ILGVALLLMF 120
  121 STLQHLIGWS HERGTTTVVI AHVTMCTAYV TIVMQSRIAS VDISLEEAAL DLGAGPIETF 180
  181 FKITLPQLIP ALITSALLTF TLSIDDLVVT EFVAGSDNPT LPMYIYSTVK NGPTPEINAL 240
  241 ATIMIGIIVV GVLLGMFISA KFQKRQNG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.221849
Match:	2onkC
Description:	No description for 2onkC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits