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View Structure Prediction Details

Protein: Gr47a-PA
Organism: Drosophila melanogaster
Length: 401 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Gr47a-PA.

Description E-value Query
Range
Subject
Range
gi|125808667, gi... - gi|54635994|gb|EAL25397.1| GA11896-PA [Drosophila pseudoobscura], gi|125808667|ref|XP_001360822.1| G...
209.0 [0..238] [400..1]

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Predicted Domain #1
Region A:
Residues: [1-236]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPFIAPLVM NNQTINTGLI GLTQRPIKQA VKQIQLAVLR MAFTSSQLCS LLTKFTALNG  60
   61 LNTYYFDTKT NAFRVSSKLK IYCAIHHALC VLALAHMSYS TASNLRVSVT VLTIGGTMAC 120
  121 CVKSCWEKAQ GIRNLARGLV TMEQKYFAGR PSGLLLKCRY YIKITFGSIT LLRIHLIQPI 180
  181 YMRRLLPSQF YLNVGAYWLL YNMLLAAVLG FYFLLWEMCR IQKLINDQMT LILARS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [237-401]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GQRNRLKKMQ HCLRLYSKLL LLCDQFNSQL GHVAIWVLAC KSWCQITFGY EIFQMVAAPK  60
   61 SIDLTMSMRV FVIFTYIFDA MNLFLGTDIS ELFSTFRADS QRILRETSRL DRLLSMFALK 120
  121 LALHPKRVVL LNVFTFDRKL TLTLLAKSTL YTICCLQNDY NKLKA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle