| Protein: | 5-HT1B-PA |
| Organism: | Drosophila melanogaster |
| Length: | 617 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for 5-HT1B-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
379.0 | [0..1] | [605..29] |
|
Region A: Residues: [1-349] |
1 11 21 31 41 51
| | | | | |
1 MLKTVTTAMA AGDDDVPASI LEIELPAILL NESLFIELNG NLTQLVDTTS NLSQIVWNRS 60
61 INGNGNSNTF DLVDDEQERA AVEFWLLVKM IAMAVVLGLM ILVTIIGNVF VIAAIILERN 120
121 LQNVANYLVA SLAVADLFVA CLVMPLGAVY EISNGWILGP ELCDIWTSCD VLCCTASILH 180
181 LVAIAADRYW TVTNIDYNNL RTPRRVFLMI FCVWFAALIV SLAPQFGWKD PDYMKRIEEQ 240
241 HCMVSQDVGY QIFATCCTFY VPLLVILFLY WKIYIIARKR IQRRAQKSFN VTLTETDCDS 300
301 AVRELKKERS KRRAERKRLE AGERTPVDGD GTGGQLQRRT RKRMRICFG
|
| Detection Method: |  |
| Confidence: | 35.522879 |
| Match: | 1f88A |
| Description: | Rhodopsin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [350-444] |
1 11 21 31 41 51
| | | | | |
1 RNTNTANVVA GSEGAVARSM AAIAVDFASL AITREETEFS TSNYDNKSHA GTELTTVSSD 60
61 ADDYRTSNAN EIITLSQQVA HATQHHLIAS HLNAI
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [445-617] |
1 11 21 31 41 51
| | | | | |
1 TPLAQSIAMG GVGCLTTTTP SEKALSGAGT VAGAVAGGSG SGSGEEGAGT EGKNAGVGLG 60
61 GVLASIANPH QKLAKRRQLL EAKRERKAAQ TLAIITGAFV ICWLPFFVMA LTMSLCKECE 120
121 IHTAVASLFL WLGYFNSTLN PVIYTIFNPE FRRAFKRILF GRKAAARARS AKI
|
| Detection Method: | |
| Confidence: | 4.13 |
| Match: | 1f88A |
| Description: | Rhodopsin |
| Matching Structure (courtesy of the PDB): |
|
