YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|61362040, gi\|...
Organism:	synthetic construct
Length:	306 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|61362040, gi|....

Description	E-value	Query Range	Subject Range
gi\|30584511, gi\|... - gi\|60653835\|gb\|AAX29610.1\| EBNA1 binding protein 2 [synthetic construct], gi\|30584511\|gb\|AAP36508.1\|...	1.0E-89	[1..306]	[1..306]
EBP2_MOUSE - Probable rRNA-processing protein EBP2 OS=Mus musculus GN=Ebna1bp2 PE=2 SV=1	1.0E-88	[1..304]	[1..304]
EBNA1BP2 - EBNA1 binding protein 2	1.0E-88	[1..306]	[1..306]
gi\|109003346, gi... - gi\|109003349\|ref\|XP_001092406.1\| PREDICTED: EBNA1 binding protein 2 isoform 3 [Macaca mulatta], gi\|1...	2.0E-88	[1..306]	[1..306]
gi\|56556187, gi\|... - gi\|56790289\|ref\|NP_001008721.1\| EBNA1 binding protein 2 [Rattus norvegicus], gi\|56556187\|gb\|AAH87738...	1.0E-86	[1..305]	[1..306]
gi\|77735789, gi\|... - gi\|77735789\|ref\|NP_001029589.1\| EBNA1 binding protein 2 [Bos taurus], gi\|74354064\|gb\|AAI02357.1\| EBN...	1.0E-84	[1..306]	[1..305]
gi\|73978069 - gi\|73978069\|ref\|XP_853475.1\| PREDICTED: similar to Probable rRNA processing protein EBP2 (EBNA1 bind...	1.0E-83	[1..306]	[1..305]
gi\|49256131 - gi\|49256131\|gb\|AAH73031.1\| Unknown (protein for MGC:82639) [Xenopus laevis]	1.0E-77	[2..304]	[5..310]

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Predicted Domain #1

Region A:
Residues: [1-306]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTPPLSDSE SESDESLVTD RELQDAFSRG LLKPGLNVVL EGPKKAVNDV NGLKQCLAEF  60
   61 KRDLEWVERL DVTLGPVPEI GGSEAPAPQN KDQKAVDPED DFQREMSFYR QAQAAVLAVL 120
  121 PRLHQLKVPT KRPTDYFAEM AKSDLQMQKI RQKLQTKQAA MERSEKAKQL RALRKYGKKV 180
  181 QTEVLQKRQQ EKAHMMNAIK KYQKGFSDKL DFLEGDQKPL AQRKKAGAKG QQMRKGPSAK 240
  241 RRYKNQKFGF GGKKKGSKWN TRESYDDVSS FRAKTAHGRG LKRPGKKGSN KRPGKRTREK 300
  301 MKNRTH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits