YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|60655699, gi\|...
Organism:	synthetic construct
Length:	489 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|60655699, gi|....

Description	E-value	Query Range	Subject Range
gi\|60652595, gi\|... - gi\|60652597\|gb\|AAX28993.1\| DPH2-like 2 [synthetic construct], gi\|60652595\|gb\|AAX28992.1\| DPH2-like 2...	0.0	[1..489]	[1..489]
gi\|55726307 - gi\|55726307\|emb\|CAH89925.1\| hypothetical protein [Pongo abelii] DPH2_PONAB - Diphthamide biosynthesis protein 2 OS=Pongo abelii GN=DPH2 PE=2 SV=1	0.0	[1..489]	[1..489]
DPH2_RAT - Diphthamide biosynthesis protein 2 OS=Rattus norvegicus GN=Dph2 PE=2 SV=1	0.0	[1..488]	[1..488]
DPH2_CRIGR - Diphthamide biosynthesis protein 2 OS=Cricetulus griseus GN=DPH2 PE=2 SV=1	0.0	[1..489]	[1..489]
DPH2_MOUSE - Diphthamide biosynthesis protein 2 OS=Mus musculus GN=Dph2 PE=1 SV=1	0.0	[1..488]	[1..488]
gi\|73978015 - gi\|73978015\|ref\|XP_532611.2\| PREDICTED: similar to diphthamide biosynthesis protein 2 isoform a [Can...	0.0	[1..487]	[1..485]
DPH2_BOVIN - Diphthamide biosynthesis protein 2 OS=Bos taurus GN=DPH2 PE=2 SV=1	0.0	[1..487]	[1..487]
gi\|3170458 - gi\|3170458\|gb\|AAC18086.1\| diphthamide biosynthesis protein-2; DPH2 [Homo sapiens]	0.0	[1..489]	[1..489]
DPH2_SCHPO - Diphthamide biosynthesis protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dph2 PE... SPBC17D1.02 - diphthamide biosynthesis protein	0.0	[5..488]	[11..493]

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Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESMFSSPAE AALQRETGVP GLLTPLPDLD GVYELERVAG FVRDLGCERV ALQFPDQLLG  60
   61 DAVAVAARLE ETTGSKMFIL GDTAYGSCCV DVLGAEQAGA QALIHFGPAC LSPPARPLPV 120
  121 AFVLRQRSVA LELCVKAFEA QNPDPKAPVV LLSEPACAHA LEALATLLRP RYLDLLVSSP 180
  181 AFPQPVGSLS PEPMPLERFG RRFPLAPGRR LEE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [214-400]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YGAFYVGGSK ASPDPDLDPD LSRLLLGWAP GQPFSSCCPD TGKTQDEGAR AGRLRARRRY  60
   61 LVERARDARV VGLLAGTLGV AQHREALAHL RNLTQAAGKR SYVLALGRPT PAKLANFPEV 120
  121 DVFVLLACPL GALAPQLSGS FFQPILAPCE LEAACNPAWP PPGLAPHLTH YADLLPGSPF 180
  181 HVALPPP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [401-489]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESELWETPDV SLITGDLRPP PAWKSSNDHG SLALTPRPQL ELAESSPAAS FLSSRSWQGL  60
   61 EPRLGQTPVT EAVSGRRGIA IAYEDEGSG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits