YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|61742725, gi\|...
Organism:	Arabidopsis thaliana
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|61742725, gi|....

Description	E-value	Query Range	Subject Range
gi\|22328185 - gi\|22328185\|ref\|NP_680548.1\| unknown protein [Arabidopsis thaliana]	179.0	[0..1]	[126..1]
gi\|92875263 - gi\|92875263\|gb\|ABE83307.1\| conserved hypothetical protein [Medicago truncatula]	117.0	[0..12]	[114..24]
gi\|115470114, gi... - gi\|54291558\|dbj\|BAD62482.1\| unknown protein [Oryza sativa Japonica Group], gi\|54291357\|dbj\|BAD62123.... gi\|218198928 - gi\|218198928\|gb\|EEC81355.1\| hypothetical protein OsI_24548 [Oryza sativa Indica Group]	108.0	[0..2]	[91..33]

Back

Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEELSQILKN NRTDDLTWFC SLSESELDLL ISLKKLVIRR AKVSGLEDLV ADKFDLKMLR  60
   61 SLGLVLMEYV RKRVEDDTSL APSVVQELSL LDSCNLLKTH VDDTVDIEEI LTDICNKKSK 120
  121 KKTRKRSR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits