YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|89110599, gi\|...
Organism:	Escherichia coli str. K-12 substr. W3110
Length:	292 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|89110599, gi|....

Description	E-value	Query Range	Subject Range
gi\|38639731, gi\|... - gi\|38639731\|ref\|NP_943500.1\| putative cytoplasmic protein [Klebsiella pneumoniae], gi\|38016829\|gb\|AA... gi\|168998698, gi... - gi\|238549717\|dbj\|BAH66068.1\| putative cytoplasmic protein [Klebsiella pneumoniae NTUH-K2044], gi\|168...	255.0	[0..1]	[292..20]
gi\|83571668, gi\|... - gi\|83571668\|ref\|ZP_00923108.1\| hypothetical protein Sdys1_01000384 [Shigella dysenteriae 1012], gi\|1...	255.0	[0..1]	[292..1]
gi\|187429985, gi... - gi\|75179970\|ref\|ZP_00699957.1\| hypothetical protein SboyB_01000298 [Shigella boydii BS512], gi\|18773...	254.0	[0..1]	[292..1]
gi\|81247179, gi\|... - gi\|82545768\|ref\|YP_409715.1\| hypothetical protein SBO_3400 [Shigella boydii Sb227], gi\|81247179\|gb\|A...	254.0	[0..1]	[292..1]
gi\|82778772, gi\|... - gi\|82778772\|ref\|YP_405121.1\| hypothetical protein SDY_3665 [Shigella dysenteriae Sd197], gi\|81242920...	253.0	[0..1]	[292..1]
gi\|30043568, gi\|... - gi\|30065306\|ref\|NP_839477.1\| hypothetical protein S4333 [Shigella flexneri 2a str. 2457T], gi\|300435... gi\|24053882, gi\|... - gi\|24114674\|ref\|NP_709184.1\| hypothetical protein SF3430 [Shigella flexneri 2a str. 301], gi\|2405388...	253.0	[0..1]	[289..1]
gi\|110616791, gi... - gi\|110807243\|ref\|YP_690763.1\| hypothetical protein SFV_3416 [Shigella flexneri 5 str. 8401], gi\|1106...	253.0	[0..1]	[289..1]
gi\|188493692, gi... - gi\|75516121\|ref\|ZP_00738239.1\| hypothetical protein Ecol5_01000181 [Escherichia coli 53638], gi\|1884... gi\|157162888, gi... - gi\|75197342\|ref\|ZP_00707412.1\| hypothetical protein EcolH_01003158 [Escherichia coli HS], gi\|1571628... gi\|254163339, gi... - gi\|254163339\|ref\|YP_003046447.1\| predicted transposase [Escherichia coli B str. REL606], gi\|25397524... gi\|83588724, gi\|... - gi\|83588724\|ref\|ZP_00927348.1\| hypothetical protein Ecol1_01000357 [Escherichia coli 101-1], gi\|1944... gi\|251786661, gi... - gi\|251786661\|ref\|YP_003000965.1\| hypothetical protein B21_03215 [Escherichia coli BL21], gi\|24237893... gi\|124528184, gi... - gi\|124528184\|ref\|ZP_01699517.1\| putative transposase, YhgA family protein [Escherichia coli B], gi\|1... gi\|253979396, gi... - gi\|254290089\|ref\|YP_003055837.1\| predicted transposase [Escherichia coli BL21(DE3)], gi\|253979396\|gb... gi\|169753281, gi... - gi\|170018353\|ref\|YP_001723307.1\| hypothetical protein EcolC_0302 [Escherichia coli ATCC 8739], gi\|16...	253.0	[0..1]	[292..1]
gi\|209756458, gi... - pir\|\|E91160 hypothetical protein ECs4253 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|189374268, gi... - gi\|189374268\|gb\|EDU92684.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|15833507, gi\|... - gi\|15833507\|ref\|NP_312280.1\| hypothetical protein ECs4253 [Escherichia coli O157:H7], gi\|13363727\|db... gi\|189369918, gi... - gi\|189369918\|gb\|EDU88334.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|217321877, gi... - gi\|217325656\|ref\|ZP_03441740.1\| putative transposase, YhgA [Escherichia coli O157:H7 str. TW14588], ... gi\|15833507, gi\|... - gi\|15833507\|ref\|NP_312280.1\| hypothetical protein ECs4253 [Escherichia coli O157:H7 str. Sakai], gi\|...	252.0	[0..1]	[292..1]
gi\|193061708, gi... - gi\|75260300\|ref\|ZP_00731568.1\| hypothetical protein EcolE2_01000188 [Escherichia coli E22], gi\|19306... gi\|75211777, gi\|... - gi\|75211777\|ref\|ZP_00711841.1\| hypothetical protein EcolB_01001133 [Escherichia coli B171], gi\|19442... gi\|157157136, gi... - gi\|75188185\|ref\|ZP_00701452.1\| hypothetical protein EcolE_01001429 [Escherichia coli E24377A], gi\|15...	252.0	[0..1]	[292..1]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKKQSSTPH DALFKLFLRQ PDTARDFLAF HLPAPIHALC DMKTLKLESS SFIDDDLRES  60
   61 YSDVLWSVKT EQGPGYIYCL IEHQSTSNKL IAFRMMRYAI AAMQNHLDAG YKTLPMVVPL 120
  121 LFYHGIES

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [129-292]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PYPYSLCWLD CFADPKLARQ LYASAFPLID VTVMPDDEIM QHRRMALLEL IQKHIRQRDL  60
   61 MGLVEQMACL LSSGYANDRQ IKGLFNYILQ TGDAVRFNDF IDGVAERSPK HKESLMTIAE 120
  121 RLRQEGEQSK ALHIAKIMLE SGVPLADIMR FTGLSEEELA AASQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.858	N/A	N/A	a.118.9	ENTH/VHS domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits