YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|61360418, gi\|...
Organism:	synthetic construct
Length:	108 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|61360418, gi|....

Description	E-value	Query Range	Subject Range
gi\|109483017 - gi\|109483017\|ref\|XP_001068383.1\| PREDICTED: similar to tubulin cofactor a (predicted) [Rattus norveg...	4.0E-29	[7..108]	[18..119]
gi\|30585151, gi\|... - gi\|61370238\|gb\|AAX43460.1\| tubulin-specific chaperone a [synthetic construct], gi\|30585151\|gb\|AAP368...	9.0E-26	[1..108]	[1..108]
TBCA_MOUSE - Tubulin-specific chaperone A OS=Mus musculus GN=Tbca PE=1 SV=3	1.0E-25	[1..108]	[1..108]
gi\|114688094 - gi\|114688094\|ref\|XP_520997.2\| PREDICTED: similar to cofactor A protein [Pan troglodytes]	5.0E-25	[1..108]	[1..108]
gi\|109077705, gi... - gi\|109077705\|ref\|XP_001107593.1\| PREDICTED: similar to tubulin-specific chaperone a [Macaca mulatta]... gi\|67972002 - gi\|67972002\|dbj\|BAE02343.1\| unnamed protein product [Macaca fascicularis]	6.0E-25	[1..108]	[1..108]
TBCA_BOVIN - Tubulin-specific chaperone A OS=Bos taurus GN=TBCA PE=1 SV=3	8.0E-25	[1..108]	[1..108]
gi\|55233244, gi\|... - gi\|58394716\|ref\|XP_320905.2\| ENSANGP00000017649 [Anopheles gambiae str. PEST], gi\|55233244\|gb\|EAA015...	2.0E-24	[1..105]	[1..105]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADPRVRQIK IKTGVVKRLV KEKVMYEKEA KQQEEKIEKM RAEDGENYDI KKQAEILQES  60
   61 RMMIPDCQRR LEAAYLDLQR ILENEKDLEE AEEYKEARLV LDSVKLEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.39794
Match:	1h7cA
Description:	Tubulin chaperone cofactor A
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
chaperone binding	1.47792074338377	bayes_pls_golite062009
binding	1.01243510413122	bayes_pls_golite062009
protein binding	0.201520398401233	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: