YRC Public Data Repository - Protein Structure Prediction

Protein:	SVF1_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	380 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SVF1_SCHPO.

Description	E-value	Query Range	Subject Range
SVF1_NEUCR - Survival factor 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGS... SVF1_NEUCR - Survival factor 1 OS=Neurospora crassa GN=svf-1 PE=3 SV=1	600.0	[0..1]	[380..1]
gi\|145011642, gi... - gi\|39976003\|ref\|XP_369392.1\| hypothetical protein MGG_06072 [Magnaporthe grisea 70-15], gb\|EAA52944....	584.0	[0..1]	[380..1]
SVF1_GIBZE - Survival factor 1 OS=Gibberella zeae GN=SVF1 PE=3 SV=1 SVF1_GIBZE - Survival factor 1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=SVF1 ...	577.0	[0..1]	[380..1]
gi\|88180941, gi\|... - gi\|88180941\|gb\|EAQ88409.1\| hypothetical protein CHGG_05028 [Chaetomium globosum CBS 148.51], gi\|1161...	570.0	[0..1]	[380..1]
SVF1_CANAL - Survival factor 1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SVF1 PE=3 SV=1 gi\|238879458 - gi\|238879458\|gb\|EEQ43096.1\| survival factor 1 [Candida albicans WO-1] SVF1_CANAL - Survival factor 1 OS=Candida albicans GN=SVF1 PE=3 SV=1	555.0	[0..1]	[380..1]
gi\|83772773 - gi\|83772773\|dbj\|BAE62901.1\| unnamed protein product [Aspergillus oryzae] gi\|169779139 - gi\|169779139\|ref\|XP_001824034.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|220692863, gi... - gi\|238499751\|ref\|XP_002381110.1\| oxidative stress protein Svf1, putative [Aspergillus flavus NRRL335...	552.0	[0..2]	[380..1]
gi\|159126801 - gi\|159126801\|gb\|EDP51917.1\| conserved hypothetical protein [Aspergillus fumigatus A1163] SVF1_ASPFU - Survival factor 1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) G... SVF1_ASPFU - Survival factor 1 OS=Aspergillus fumigatus GN=svf1 PE=3 SV=1	550.0	[0..2]	[380..1]
gi\|40746139, gi\|... - gi\|67515671\|ref\|XP_657721.1\| hypothetical protein AN0117.2 [Aspergillus nidulans FGSC A4], ref\|XP_40... SVF1_EMENI - Survival factor 1 OS=Emericella nidulans GN=svf1 PE=3 SV=1	550.0	[0..2]	[350..1]
SVF1_ASHGO - Survival factor 1 OS=Ashbya gossypii GN=SVF1 PE=3 SV=1 SVF1_ASHGO - Survival factor 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=S...	548.0	[0..1]	[380..1]
gi\|114195352, gi... - gi\|115387525\|ref\|XP_001211268.1\| survival factor 1 [Aspergillus terreus NIH2624], gi\|114195352\|gb\|EA...	533.0	[0..8]	[380..29]

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Predicted Domain #1

Region A:
Residues: [1-380]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAWLQSSIS YYTGTAEPVY GPEAIQPVTA SVQGINPFHR LEADDFKWST PSSSHVETQV  60
   61 FYIKPNEGDY MCFVQLIHSN LGSWTTTAQS TCRIFDLKHP ENDLWTSTNM DQFSFENDKT 120
  121 SFVAKNCSVV LEDQKRYRIR ASINMDSIID ITVHQDAPPF KIGEDGNSTY GTDPSKPWAS 180
  181 MKHTFWPRTR VEGSIVARGR VVDVTGPGMF VHALQNGKPH HLASSWEFAL LQHKKFTAIM 240
  241 MQFKTPPSYG STIVNIGGIA MKDKIISATV DNTIEHVETT LDPDTEWHEP TRISYEWDGK 300
  301 DAETYTEDIH LSVDAPLGRR LQRIDVLAEI PSWLKGFVHG VSGTKPFIYQ YFSPVKFTLK 360
  361 MGDEVIEDEA TLFNETTFIS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.22
Match:	2ichA
Description:	No description for 2ichA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits