YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|190691671, gi...
Organism:	synthetic construct
Length:	131 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190691671, gi....

Description	E-value	Query Range	Subject Range
gi\|114619773 - gi\|114619773\|ref\|XP_528101.2\| PREDICTED: similar to Leptin receptor overlapping transcript-like 1 [P...	185.0	[0..1]	[131..64]
gi\|74197155 - gi\|74197155\|dbj\|BAE35124.1\| unnamed protein product [Mus musculus]	177.0	[0..1]	[131..1]
gi\|66911159, gi\|... - gi\|66911159\|gb\|AAH97642.1\| MGC53950 protein [Xenopus laevis], gi\|27696439\|gb\|AAH43984.1\| MGC53950 pr...	175.0	[0..1]	[131..1]
gi\|60834439 - gi\|60834439\|gb\|AAX37094.1\| leptin receptor gene-related protein [synthetic construct]	174.0	[0..1]	[131..1]
OBRG_RAT - Leptin receptor gene-related protein OS=Rattus norvegicus GN=Leprot PE=1 SV=1 tr\|G3HY61\|G3HY61... - Leptin receptor gene-related protein OS=Cricetulus griseus GN=I79_015979 PE=4 SV=1	173.0	[0..1]	[131..1]
OBRG_BOVIN - Leptin receptor gene-related protein OS=Bos taurus GN=LEPROT PE=2 SV=1 gi\|73956114 - gi\|73956114\|ref\|XP_852098.1\| PREDICTED: similar to Leptin receptor gene-related protein (OB-R gene r...	172.0	[0..1]	[131..1]
gi\|123996815, gi... - gi\|60821033\|gb\|AAX36558.1\| leptin receptor overlapping transcript-like 1 [synthetic construct], gi\|1... LERL1_PONAB - Leptin receptor overlapping transcript-like 1 OS=Pongo abelii GN=LEPROTL1 PE=2 SV=1 LEPROTL1 - leptin receptor overlapping transcript-like 1 ENSPTRT00000037287 - null LERL1_PONPY - Leptin receptor overlapping transcript-like 1 - Pongo pygmaeus (Orangutan)	172.0	[0..1]	[131..1]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGVKALVAL SFSGAIGLTF LMLGCALEDY GVYWPLFVLI FHAISPIPHF IAKRVTYDSD  60
   61 ATSSACRELA YFFTTGIVVS AFGFPVILAR VAVIKWGACG LVLAGNAVIF LTIQGFFLIF 120
  121 GRGDDFSWEQ W

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	56.958607
Match:	PF04133.5
Description:	No description for PF04133.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits