YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|60655443
Organism:	synthetic construct
Length:	219 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|60655443.

Description	E-value	Query Range	Subject Range
gi\|114629362, gi... - gi\|114629364\|ref\|XP_001138158.1\| PREDICTED: nudix-type motif 5 isoform 9 [Pan troglodytes], gi\|11462...	4.0E-45	[1..219]	[1..219]
gi\|61372656, gi\|... - gi\|61372656\|gb\|AAX43884.1\| nudix-type motif 5 [synthetic construct], gi\|61368355\|gb\|AAX43161.1\| nudi...	4.0E-45	[1..219]	[1..219]
gi\|109088211, gi... - gi\|109088211\|ref\|XP_001083539.1\| PREDICTED: nudix (nucleoside diphosphate linked moiety X)-type moti...	1.0E-44	[1..219]	[1..219]
gi\|6694937 - gi\|6694937\|gb\|AAF25479.1\| nudix hydrolase NUDT5 [Homo sapiens]	2.0E-44	[1..219]	[1..219]
NUDT5_RAT - ADP-sugar pyrophosphatase OS=Rattus norvegicus GN=Nudt5 PE=2 SV=1	2.0E-43	[1..219]	[1..219]
gi\|73949060 - gi\|73949060\|ref\|XP_535190.2\| PREDICTED: similar to ADP-sugar pyrophosphatase (Nucleoside diphosphate...	4.0E-43	[1..219]	[1..219]
NUDT5_PONAB - ADP-sugar pyrophosphatase OS=Pongo abelii GN=NUDT5 PE=2 SV=1 NUDT5_PONPY - ADP-sugar pyrophosphatase - Pongo pygmaeus (Orangutan)	8.0E-43	[1..219]	[1..216]

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Predicted Domain #1

Region A:
Residues: [1-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQEPTESS QNGKQYIISE ELISEGKWVK LEKTTYMDPT GKTRTWESVK RTTRKEQTAD  60
   61 GVAVIPVLQR TLHYECIVLV KQFRPPMGGY CIEFPAGLID DGETPEAAAL RELEEETGYK 120
  121 GDIAECSPAV CMDPGLSNCT IHIVTVTING DDAENARPKP KPGDGEFVEV ISLPKNDLLQ 180
  181 RLDALVAEEH LTVDARVYSY ALALKHANAK PFEVPFLKF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.39794
Match:	2dsbA
Description:	No description for 2dsbA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits