YRC Public Data Repository - Protein Structure Prediction

Protein:	VTC1_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	122 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VTC1_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|49647131, gi\|... - gi\|50547591\|ref\|XP_501265.1\| hypothetical protein [Yarrowia lipolytica], gi\|49647131\|emb\|CAG83518.1\|...	168.0	[0..1]	[120..23]
gi\|39973695, gi\|... - gi\|39973695\|ref\|XP_368238.1\| conserved hypothetical protein [Magnaporthe grisea 70-15], gb\|EAA49348....	165.0	[0..1]	[122..1]
gi\|42545891, gi\|... - gi\|46107238\|ref\|XP_380678.1\| hypothetical protein FG00502.1 [Gibberella zeae PH-1], gi\|42545891\|gb\|E...	163.0	[0..3]	[118..655]
gi\|111066237, gi... - gi\|169603914\|ref\|XP_001795378.1\| hypothetical protein SNOG_04966 [Phaeosphaeria nodorum SN15], gi\|11...	163.0	[0..1]	[121..1]
gi\|116201569, gi... - gi\|88177187\|gb\|EAQ84655.1\| conserved hypothetical protein [Chaetomium globosum CBS 148.51], gi\|11620...	161.0	[0..1]	[122..1]
gi\|159131077 - gi\|159131077\|gb\|EDP56190.1\| vacuolar transporter chaperon Vtc1, putative [Aspergillus fumigatus A116... gi\|66849956, gi\|... - gi\|70995110\|ref\|XP_752321.1\| vacuolar transporter chaperon Vtc1 [Aspergillus fumigatus Af293], gi\|66...	160.0	[0..1]	[121..1]
gi\|114189008, gi... - gi\|115402171\|ref\|XP_001217162.1\| vacuolar transporter chaperone 1 [Aspergillus terreus NIH2624], gi\|...	160.0	[0..1]	[121..1]
gi\|49086928, gi\|... - gi\|67521754\|ref\|XP_658938.1\| hypothetical protein AN1334.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	159.0	[0..1]	[120..1]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTQPLLQTT PGKRIALPVR VEPKVFFANE RTFLSWLSFA VVLGGLSVGL LNFGDRIGKI  60
   61 SAGLFTIVAI GTMGYALGIY HWRASAIRRR GSGPYDDRLG PTILCFVLLA AIITNFVLRM 120
  121 LF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.983	0.014	microautophagy	a.7.2	Enzyme IIa from lactose specific PTS, IIa-lac

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits