YRC Public Data Repository - Protein Structure Prediction

Protein:	TPC6B_BOVIN
Organism:	Bos taurus
Length:	158 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TPC6B_BOVIN.

Description	E-value	Query Range	Subject Range
gi\|73536260, gi\|... - gi\|73536261\|pdb\|2BJN\|B Chain B, X-Ray Structure Of Human Tpc6, gi\|73536260\|pdb\|2BJN\|A Chain A, X-Ray...	6.0E-68	[1..158]	[3..160]
gi\|50748454 - gi\|50748454\|ref\|XP_421252.1\| PREDICTED: similar to Trafficking protein particle complex subunit 6B [...	1.0E-67	[1..158]	[1..158]
gi\|149051293, gi... - gi\|27664540\|ref\|XP_216708.1\| PREDICTED: similar to Trafficking protein particle complex subunit 6B [...	2.0E-66	[1..158]	[1..158]
TPC6B_MOUSE - Trafficking protein particle complex subunit 6B OS=Mus musculus GN=Trappc6b PE=1 SV=1	2.0E-66	[1..158]	[1..158]
gi\|54400560, gi\|... - gi\|54400560\|ref\|NP_001006029.1\| trafficking protein particle complex 6b [Danio rerio], gi\|53733879\|g...	4.0E-63	[1..158]	[1..157]
gi\|28279847, gi\|... - gi\|28279847\|gb\|AAH44077.1\| MGC52668 protein [Xenopus laevis], gi\|148222647\|ref\|NP_001079541.1\| hypot...	3.0E-61	[1..157]	[1..157]

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Predicted Domain #1

Region A:
Residues: [1-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADEALFLLL HNEMVSGVYK SAEQGEVENG RCITKLENMG FRVGQGLIER FTKDTARFKD  60
   61 ELDIMKFICK DFWTTVFKKQ IDNLRTNHQG IYVLQDNKFR LLTQMSAGKQ YLEHASKYLA 120
  121 FTCGLIRGGL SNLGIKSIVT AEVSSMPACK FQVMIQKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.30103
Match:	2bjnA
Description:	X-ray Structure of human TPC6
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits