YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|157822419, gi...
Organism:	Rattus norvegicus
Length:	441 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|157822419, gi....

Description	E-value	Query Range	Subject Range
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	0.0	[4..439]	[1161..1579]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	0.0	[4..440]	[1033..1452]
gi\|35214926, gi\|... - gi\|37523920\|ref\|NP_927297.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	5.0E-97	[5..439]	[639..1056]
gi\|17225204 - gi\|17225204\|gb\|AAL37298.1\|AF323582_1 beta transducin-like protein HET-E2C [Podospora anserina]	9.0E-97	[2..439]	[828..1248]
gi\|17227525, gi\|... - gi\|17227525\|ref\|NP_484073.1\| WD-40 repeat-containing protein [Nostoc sp. PCC 7120], gi\|17135007\|dbj\|... gi\|25532020 - pir\|\|AE1810 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	1.0E-95	[5..439]	[634..1057]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEREVSTAP AGTDMPAAKK QKLSSDENSN PDLSGDENDD AVSIESGTNT ERPDTPTNTP  60
   61 NAPGRKSWGK GKWKSKKCKY SFKCVNSLKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.39794
Match:	2pm6B
Description:	No description for 2pm6B was found.

Predicted Domain #2

Region A:
Residues: [91-441]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DHNQPLFGVQ FNWHSKEGDP LVFATVGSNR VTLYECHSQG EIRLLQSYVD ADADENFYTC  60
   61 AWTYDSNTSH PLLAVAGSRG IIRIINPITM QCIKHYVGHG NAINELKFHP RDPNLLLSVS 120
  121 KDHALRLWNI QTDTLVAIFG GVEGHRDEVL SADYDLLGEK IMSCGMDHSL KLWRINSKRM 180
  181 MNAIKESYDY NPNKTNRPFI SQKIHFPDFS TRDIHRNYVD CVRWLGDLIL SKSCENAIVC 240
  241 WKPGKMEDDI DKIKPSESNV TILGRFDYSQ CDIWYMRFSM DFWQKMLALG NQVGKLYVWD 300
  301 LEVEDPHKAK CTTLTHHKCG AAIRQTSFSR DSSILIAVCD DASIWRWDRL R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.522879
Match:	2qxvA
Description:	No description for 2qxvA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits