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View Structure Prediction Details

Protein: gi|56236062, gi|...
Organism: Arabidopsis thaliana
Length: 389 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|56236062, gi|....

Description E-value Query
Range
Subject
Range
gi|15220642, gi|... - pir||A96704 hypothetical protein T23K23.7 [imported] - Arabidopsis thaliana, ref|NP_176975.1| expre...
392.0 [0..61] [389..55]
gi|215706972, gi... - gi|215706972|dbj|BAG93432.1| unnamed protein product [Oryza sativa Japonica Group], gi|115451801|ref...
190.0 [0..5] [290..16]
gi|157817865, gi... - ref|XP_226262.2| similar to mKIAA1612 protein [Rattus norvegicus], gi|157817865|ref|NP_001100881.1| ...
180.0 [0..1] [342..56]
gi|50845214 - gi|50845214|gb|AAT84604.1| prolyl 4-hydroxylase [Dianthus caryophyllus]
177.0 [0..4] [230..60]

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Predicted Domain #1
Region A:
Residues: [1-215]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEKEHPRLI LHNFLSPAEC KELELIHKSS STIGYRPNVF STTLSHLIAT NSPHLIIPFV  60
   61 SIRERLKEKI EETFGCEYEL FIEFTGLISW CKGASIGWHS DDNRSYLKQR DFAAVCYLNS 120
  121 YEKDFIGGLF RFQSGEPVTV APSAGDVIMY TADDRNIHSV DEVTDGERLT LALWFSRDSS 180
  181 HDEDSKLLSR LSQCTSHEVC LPLPASTNMY WFCPH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.221849
Match: 3dkqA
Description: No description for 3dkqA was found.

Predicted Domain #2
Region A:
Residues: [216-389]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QDGSNQNIGF DVCVARLHLL GFDVHSLQGE DHSTDASEQL MGPLQLAKGG KLLTRKFANI  60
   61 LHALQVVQFY HWKASELVTS NVENDTLEEV KAMSHSQLET INALKSVFLL DENLVATTFG 120
  121 YSCSGEDRKD SLDLTGIALA VTSWEEYSCK LLKELLSSLP QWKTYQTIHK VESD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle