YRC Public Data Repository - Protein Structure Prediction

Protein:	CLP1_MACFA
Organism:	Macaca fascicularis
Length:	425 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CLP1_MACFA.

Description	E-value	Query Range	Subject Range
CLP1_RAT - Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Rattus norvegicus GN=Clp1 PE=2 SV=1 CLP1_MOUSE - Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Mus musculus GN=Clp1 PE=1 SV=1	0.0	[1..425]	[1..425]
CLP1_BOVIN - Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Bos taurus GN=CLP1 PE=2 SV=1 gi\|73982630 - gi\|73982630\|ref\|XP_852672.1\| PREDICTED: similar to Pre-mRNA cleavage complex II protein Clp1 [Canis ...	0.0	[1..425]	[1..425]
CLP1_CHICK - Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Gallus gallus GN=CLP1 PE=2 SV=1	0.0	[1..425]	[1..425]
gi\|66541960 - gi\|66541960\|ref\|XP_623706.1\| PREDICTED: similar to CG5970-PA [Apis mellifera]	2.0E-97	[7..423]	[3..420]
CLP1_ANOGA - Protein CLP1 homolog OS=Anopheles gambiae GN=cbc PE=3 SV=2 gi\|58377970, gi\|... - gi\|58377970\|ref\|XP_308174.2\| AGAP007701-PA [Anopheles gambiae str. PEST], gi\|55245198\|gb\|EAA04663.2\|...	3.0E-94	[7..423]	[4..421]
cbc-PA - The gene crowded by cid is referred to in FlyBase by the symbol Dmel\cbc (CG5970, FBgn0033842). It i... gi\|220943038 - gi\|220943038\|gb\|ACL84062.1\| CG5970-PA [synthetic construct]	2.0E-92	[1..423]	[1..420]
clpf-1 - status:Confirmed UniProt:P52874 protein_id:CAA84329.1	4.0E-92	[1..423]	[1..423]
gi\|115445039, gi... - gi\|50906345\|ref\|XP_464661.1\| putative ATP/GTP-binding protein [Oryza sativa (japonica cultivar-group...	4.0E-92	[11..423]	[10..431]

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Predicted Domain #1

Region A:
Residues: [1-425]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEEANDDKK PTTKFELERE TELRFEVEAS QSVQLELLTG MAEIFGTELT RNKKFTFDAG  60
   61 AKVAVFTWHG CSVQLSGRTE VAYVSKDTPM LLYLNTHTAL EQMRRQAEKE EERGPRVMVV 120
  121 GPTDVGKSTV CRLLLNYAVR LGRRPTYVEL DVGQGSVSIP GTMGALYIER PADVEEGFSI 180
  181 QAPLVYHFGS TTPGTNIKLY NKITSRLADV FNQRCEVNRR ASVSGCVINT CGWVKGSGYQ 240
  241 ALVHAASAFE VDVVVVLDQE RLYNELKRDL PHFVRTVLLP KSGGVVERSK DFRRECRDER 300
  301 IREYFYGFRG CFYPHAFNVK FSDVKIYKVG APTIPDSCLP LGMSQEDNQL KLVPVTPGRD 360
  361 MVHHLLSVST AEGTEENLSE TSVAGFIVVT SVDLEHQVFT VLSPAPRPLP KNFLLIMDIR 420
  421 FMDLK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.522879
Match:	2npiA
Description:	No description for 2npiA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits