YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|61361428, gi\|...
Organism:	synthetic construct
Length:	233 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|61361428, gi|....

Description	E-value	Query Range	Subject Range
gi\|55730559 - gi\|55730559\|emb\|CAH92001.1\| hypothetical protein [Pongo abelii] gi\|55730559\|emb\|... - hypothetical protein [Pongo pygmaeus]	1.0E-95	[1..209]	[1..209]
gi\|60653613, gi\|... - gi\|60653613\|gb\|AAX29500.1\| cofactor required for Sp1 transcriptional activation subunit 9 33kDa [syn...	2.0E-95	[1..233]	[1..233]
gi\|76688712, gi\|... - gi\|76688712\|ref\|XP_869249.1\| PREDICTED: similar to Cofactor required for Sp1 transcriptional activat...	1.0E-94	[1..233]	[1..233]
gi\|113205910, gi... - gi\|77745597\|gb\|ABB02676.1\| cofactor required for Sp1 transcriptional activation subunit 9 [Sus scrof...	3.0E-94	[1..233]	[1..233]
gi\|109079532 - gi\|109079532\|ref\|XP_001104930.1\| PREDICTED: cofactor required for Sp1 transcriptional activation, su...	1.0E-93	[1..233]	[1..232]
MED7_MOUSE - Mediator of RNA polymerase II transcription subunit 7 OS=Mus musculus GN=Med7 PE=1 SV=2	2.0E-93	[1..233]	[1..233]
gi\|109487990, gi... - gi\|109490586\|ref\|XP_001069084.1\| PREDICTED: similar to Cofactor required for Sp1 transcriptional act...	2.0E-93	[1..209]	[1..209]
gi\|73954132 - gi\|73954132\|ref\|XP_536456.2\| PREDICTED: similar to Cofactor required for Sp1 transcriptional activat...	4.0E-93	[1..209]	[1..209]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEPQQVSAL PPPPMQYIKE YTDENIQEGL APKPPPPIKD SYMMFGNQFQ CDDLIIRPLE  60
   61 SQGIERLHPM QFDHKKELRK LNMSILINFL DLLDILIRSP GSI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	22.236572
Match:	PF05983.2
Description:	No description for PF05983.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [104-233]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KREEKLEDLK LLFVHVHHLI NEYRPHQARE TLRVMMEVQK RQRLETAERF QKHLERVIEM  60
   61 IQNCLASLPD DLPHSEAGMR VKTEPMDADD SNNCTGQNEH QRENSGHRRD QIIEKDAALC 120
  121 VLIDEMNERP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.522879
Match:	1ykeA
Description:	Structure of the mediator MED7/MED21 subcomplex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits