YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|149022270, gi...
Organism:	Rattus norvegicus
Length:	141 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|149022270, gi....

Description	E-value	Query Range	Subject Range
gi\|114581903 - gi\|114581903\|ref\|XP_525965.2\| PREDICTED: similar to mitochondrial ATP synthase subunit 9 precursor [...	178.0	[0..1]	[141..140]
gi\|109096967 - gi\|109096967\|ref\|XP_001107007.1\| PREDICTED: ATP synthase, H+ transporting, mitochondrial F0 complex,...	153.0	[0..1]	[141..58]
gi\|50750427 - gi\|50750427\|ref\|XP_426577.1\| PREDICTED: similar to Cg1746-prov protein [Gallus gallus]	152.0	[0..14]	[141..202]
gi\|85794840, gi\|... - gi\|85794840\|ref\|NP_005167.2\| ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 iso... gi\|114644458 - gi\|114644458\|ref\|XP_509102.2\| PREDICTED: ATP synthase, H+ transporting, mitochondrial F0 complex, su...	150.0	[0..1]	[141..58]
gi\|73996376 - gi\|73996376\|ref\|XP_534788.2\| PREDICTED: similar to ATP synthase, H+ transporting, mitochondrial F0 c...	148.0	[0..1]	[141..112]
AT5G2_RAT - ATP synthase F(0) complex subunit C2, mitochondrial OS=Rattus norvegicus GN=Atp5g2 PE=2 SV=1	148.0	[0..1]	[141..1]
AT5G3_BOVIN - ATP synthase F(0) complex subunit C3, mitochondrial OS=Bos taurus GN=ATP5G3 PE=2 SV=1	147.0	[0..1]	[141..1]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFACAKLART PALIRAGSRV AYRPISASVL SRPETRTGEG STVFNGAQNG VCQLIRREFQ  60
   61 TSVISRDIDT AAKFIGAGAA TVGVAGSGAG IGTVFGSLII GYARNPSLKQ QLFSYAILGF 120
  121 ALSEAMGLFC LMVAFLILFA M

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.0
Match:	1yceA
Description:	Structure of the rotor ring of F-type Na+-ATPase from Ilyobacter tartaricus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits