YRC Public Data Repository - Protein Structure Prediction

Protein:	AP1M1_BOVIN
Organism:	Bos taurus
Length:	423 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AP1M1_BOVIN.

Description	E-value	Query Range	Subject Range
gi\|56119012, gi\|... - gi\|56119012\|ref\|NP_001007887.1\| adaptor-related protein complex 1, mu 1 subunit [Gallus gallus], gi\|... gi\|542177093\|ref... - PREDICTED: AP-1 complex subunit mu-1 isoform X2 [Zonotrichia albicollis]	0.0	[1..423]	[1..423]
gi\|148233900, gi... - gi\|66910694\|gb\|AAH97533.1\| MGC114659 protein [Xenopus laevis], gi\|148233900\|ref\|NP_001089449.1\| hypo...	0.0	[1..423]	[1..423]
gi\|89268628, gi\|... - gi\|89268628\|emb\|CAJ83030.1\| adaptor-related protein complex 1, mu 1 subunit [Xenopus tropicalis], gi...	0.0	[1..423]	[1..423]
gi\|62089202 - gi\|62089202\|dbj\|BAD93045.1\| adaptor-related protein complex 1, mu 1 subunit variant [Homo sapiens]	0.0	[1..423]	[32..466]
AP1M1_RAT - AP-1 complex subunit mu-1 OS=Rattus norvegicus GN=Ap1m1 PE=1 SV=3 gi\|194690426, gi... - gi\|212274717\|ref\|NP_001130911.1\| hypothetical protein LOC100192015 [Zea mays], gi\|194690426\|gb\|ACF79...	0.0	[1..423]	[1..423]
gi\|55249923 - gb\|AAH86151.1\| Unknown (protein for MGC:98582) [Xenopus laevis] AP1M1_MOUSE - AP-1 complex subunit mu-1 OS=Mus musculus GN=Ap1m1 PE=1 SV=3	0.0	[1..423]	[1..423]
gi\|73986112 - gi\|73986112\|ref\|XP_866035.1\| PREDICTED: similar to adaptor-related protein complex 1, mu 1 subunit i... gi\|76621145 - gi\|76621145\|ref\|XP_887101.1\| PREDICTED: similar to adaptor-related protein complex 1, mu 1 subunit i...	0.0	[1..423]	[1..424]
gi\|114675919 - gi\|114675919\|ref\|XP_001172758.1\| PREDICTED: adaptor-related protein complex 1, mu 1 subunit isoform ...	0.0	[1..423]	[1..425]

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Predicted Domain #1

Region A:
Residues: [1-423]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASAVYVLD LKGKVLICRN YRGDVDMSEV EHFMPILMEK EEEGMLSPIL AHGGVRFMWI  60
   61 KHNNLYLVAT SKKNACVSLV FSFLYKVVQV FSEYFKELEE ESIRDNFVII YELLDELMDF 120
  121 GYPQTTDSKI LQEYITQEGH KLETGAPRPP ATVTNAVSWR SEGIKYRKNE VFLDVIESVN 180
  181 LLVSANGNVL RSEIVGSIKM RVFLSGMPEL RLGLNDKVLF DNTGRGKSKS VELEDVKFHQ 240
  241 CVRLSRFEND RTISFIPPDG EFELMSYRLN THVKPLIWIE SVIEKHSHSR IEYMIKAKSQ 300
  301 FKRRSTANNV EIHIPVPNDA DSPKFKTTVG SVKWVPENSE IVWSIKSFPG GKEYLMRAHF 360
  361 GLPSVEAEDK EGKPPISVKF EIPYFTTSGI QVRYLKIIEK SGYQALPWVR YITQNGDYQL 420
  421 RTQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	156.0
Match:	1w63M
Description:	AP1 clathrin adaptor core
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits