YRC Public Data Repository - Protein Structure Prediction

Protein:	YJ15_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	264 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJ15_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|28922400, gi\|... - gi\|32412886\|ref\|XP_326923.1\| hypothetical protein [Neurospora crassa], gi\|28922400\|gb\|EAA31634.1\| hy... gi\|85099937 - gi\|85099937\|ref\|XP_960870.1\| hypothetical protein [Neurospora crassa OR74A]	300.0	[0..2]	[239..88]
gi\|42545479, gi\|... - gi\|46137161\|ref\|XP_390272.1\| hypothetical protein FG10096.1 [Gibberella zeae PH-1], gi\|42545479\|gb\|E...	300.0	[0..2]	[239..110]
gi\|67901380, gi\|... - gi\|67901380\|ref\|XP_680946.1\| hypothetical protein AN7677.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	292.0	[0..2]	[239..82]
gi\|44983276 - gi\|44983276\|gb\|AAS52458.1\| AEL227Cp [Ashbya gossypii ATCC 10895] gi\|45190380, gi\|... - gi\|45190380\|ref\|NP_984634.1\| AEL227Cp [Ashbya gossypii ATCC 10895], gi\|44983276\|gb\|AAS52458.1\| AEL22...	271.0	[0..2]	[239..62]
gi\|207346231 - gi\|207346231\|gb\|EDZ72789.1\| YDR479Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190404599 - gi\|190404599\|gb\|EDV07866.1\| peroxin [Saccharomyces cerevisiae RM11-1a] PEX29 - Peroxisomal integral membrane peroxin, involved in the regulation of peroxisomal size, number and di... PEX29_YEAST - Peroxisomal membrane protein PEX29 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PEX29...	263.0	[0..2]	[239..114]
gi\|169778249 - gi\|169778249\|ref\|XP_001823590.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83772327 - gi\|83772327\|dbj\|BAE62457.1\| unnamed protein product [Aspergillus oryzae]	254.0	[0..2]	[239..83]
gi\|114189669, gi... - gi\|115433360\|ref\|XP_001216817.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	251.0	[0..2]	[237..84]
gi\|49648586, gi\|... - gi\|49648586\|emb\|CAG80906.1\| YALI0D11858p [Yarrowia lipolytica], gi\|21628916\|gb\|AAM68970.1\|AF480881_1... gi\|50550491, gi\|... - gi\|50550491\|ref\|XP_502718.1\| YALI0D11858p [Yarrowia lipolytica], gi\|49648586\|emb\|CAG80906.1\| YlPEX24...	248.0	[0..3]	[239..178]
gi\|88184866, gi\|... - gi\|88184866\|gb\|EAQ92334.1\| hypothetical protein CHGG_00569 [Chaetomium globosum CBS 148.51], gi\|1161...	245.0	[0..2]	[239..101]
gi\|90305152, gi\|... - gi\|90305152\|gb\|EAS34783.1\| hypothetical protein CIMG_00137 [Coccidioides immitis RS], gi\|119191520\|r...	240.0	[0..2]	[239..86]

Back

Predicted Domain #1

Region A:
Residues: [1-71]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNELNPILL SQNSIRFATR VAIFFIIRDE LVEAVTWRHP VKSMCLGLTI TLLYLHPVSF  60
   61 SAILLLVFLT M

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [72-264]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPISMTHDVT TNLKDLQNFM ASYSSSYDQL LYFRQNYYHH ITPSAISSGL LVSLVLIFLL  60
   61 AYLRISIDRY LPIAIWIGLI SLHPKLRSYL IQFYSAKRDH VPYLQIRNEL AQVWRHVDIS 120
  121 GSQTTTRYTS FPKFNPENSV TSLDLVEPPE NYSWAPQSDW TFVPPNEFRR FILWSPQPPK 180
  181 MNRKSSHGSN LPL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits