YRC Public Data Repository - Protein Structure Prediction

Protein:	SHR3_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	215 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SHR3_SCHPO.

Description	E-value	Query Range	Subject Range
SHR3_YEAST - Secretory component protein SHR3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SHR3 PE... SHR3 - Endoplasmic reticulum packaging chaperone, required for incorporation of amino acid permeases into C...	297.0	[0..12]	[215..4]
orf19.10874 - CSH3 CGDID:CAL0004176 Assembly 19, Contig19-20174 (8123, 8833) CDS, translated using codon table 12 ... gi\|68489085, gi\|... - gi\|68489085\|ref\|XP_711608.1\| hypothetical protein CaO19.10874 [Candida albicans SC5314], gi\|46432924... gi\|238881517 - gi\|238881517\|gb\|EEQ45155.1\| conserved hypothetical protein [Candida albicans WO-1]	254.0	[0..12]	[210..4]
gi\|28919853, gi\|... - gi\|32414419\|ref\|XP_327689.1\| hypothetical protein [Neurospora crassa], gi\|28919853\|gb\|EAA29251.1\| co... gi\|85090584 - gi\|85090584\|ref\|XP_958487.1\| hypothetical protein NCU07403 [Neurospora crassa OR74A]	254.0	[0..8]	[209..14]
gi\|145018608, gi... - gi\|39974715\|ref\|XP_368748.1\| hypothetical protein MGG_00496 [Magnaporthe grisea 70-15], gb\|EAA48838....	250.0	[0..8]	[197..13]
gi\|46108302, gi\|... - gi\|46108302\|ref\|XP_381209.1\| hypothetical protein FG01033.1 [Gibberella zeae PH-1], gi\|42545008\|gb\|E...	243.0	[0..8]	[184..12]
gi\|45185093, gi\|... - gi\|45185093\|ref\|NP_982810.1\| ABL137Wp [Ashbya gossypii ATCC 10895], gi\|44980729\|gb\|AAS50634.1\| ABL13... gi\|44980729 - gi\|44980729\|gb\|AAS50634.1\| ABL137Wp [Ashbya gossypii ATCC 10895]	228.0	[0..12]	[190..6]
gi\|49642565 - gi\|49642565\|emb\|CAH00527.1\| KLLA0D08283p [Kluyveromyces lactis] gi\|50306911, gi\|... - gi\|50306911\|ref\|XP_453431.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642565\|emb\|CAH0052...	227.0	[0..12]	[205..5]
gi\|49525921, gi\|... - gi\|50288369\|ref\|XP_446613.1\| unnamed protein product [Candida glabrata], gi\|49525921\|emb\|CAG59540.1\|... gi\|49525921 - gi\|49525921\|emb\|CAG59540.1\| unnamed protein product [Candida glabrata]	224.0	[0..18]	[194..10]

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Predicted Domain #1

Region A:
Residues: [1-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKRSIFRFA DEKGLKVAAR YGVLMSTSFI FALLFHSSVA DVNTLWSPGP ESAFDAAETY  60
   61 YTLVAGSHFI VKYTVYTIMG LNMIFHLIQA TGAKGDDKLF FYSSTLLYLT ALILFIVNVA 120
  121 PSMLVVKLQN YVQFPRNMHL SVLAASHVLV EFLLAGVILI QLGYVFGYHV QSIQQREYAE 180
  181 DMREQELAEK AKLESESATT QSVETVSTES VSKRK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	117.638272
Match:	PF08229.2
Description:	No description for PF08229.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits