YRC Public Data Repository - Protein Structure Prediction

Protein:	RL38A_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	74 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL38A_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|76646012 - gi\|76646012\|ref\|XP_872162.1\| PREDICTED: similar to 60S ribosomal protein L38, partial [Bos taurus]	137.0	[0..1]	[70..410]
gi\|50808293 - gi\|50808293\|ref\|XP_428957.1\| PREDICTED: similar to G protein-coupled receptor 142, partial [Gallus g...	123.0	[0..2]	[74..42]
gi\|115313002 - gi\|115313002\|gb\|AAI24070.1\| Zgc:152655 protein [Danio rerio]	109.0	[0..14]	[70..186]
rpl3802 - 60S ribosomal protein L38 RL38B_SCHPO - 60S ribosomal protein L38-2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl3802 PE=3 S...	106.0	[0..1]	[74..1]
gi\|109117614 - gi\|109117614\|ref\|XP_001089804.1\| PREDICTED: similar to 60S ribosomal protein L38 [Macaca mulatta]	105.0	[0..2]	[70..129]
gi\|50931949, gi\|... - gi\|50931949\|ref\|XP_475502.1\| putative 60S ribosomal protein L38 [Oryza sativa (japonica cultivar-gro...	101.0	[0..1]	[70..1]
RL38_ARATH - 60S ribosomal protein L38 OS=Arabidopsis thaliana GN=RPL38A PE=3 SV=1	100.0	[0..1]	[70..1]
gi\|77745467 - gi\|77745467\|gb\|ABB02632.1\| ribosomal protein L38-like [Solanum tuberosum] RL38_SOLLC - 60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1	99.0	[0..1]	[70..1]
gi\|159489791, gi... - gi\|27497793\|gb\|AAO13217.1\| 60S ribosomal protein L38 [Chlamydomonas reinhardtii], gi\|159489791\|ref\|X...	99.0	[0..1]	[70..1]

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Predicted Domain #1

Region A:
Residues: [1-74]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRQISDIKQ FLEIARRKDA TSARIKKNTN KDVKFKLRCS KYLYTLVVAD AKKAEKLRQS  60
   61 LPPDLTVTEV GKKA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	44.79588
Match:	PF01781.9
Description:	No description for PF01781.9 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits