YRC Public Data Repository - Protein Structure Prediction

Protein:	RABP1_CHICK
Organism:	Gallus gallus
Length:	137 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RABP1_CHICK.

Description	E-value	Query Range	Subject Range
gi\|114658435 - gi\|114658435\|ref\|XP_001142851.1\| PREDICTED: similar to cellular retinoic acid-binding protein; CRABP...	203.0	[0..1]	[137..245]
ENSOCUP000000003... - pep:novel scaffold:oryCun2:GL018746:701847:707770:1 gene:ENSOCUG00000000431 transcript:ENSOCUT000000... tr\|G3H0C0\|G3H0C0... - Cellular retinoic acid-binding protein 1 OS=Cricetulus griseus GN=I79_003575 PE=3 SV=1 gi\|50545 - gi\|50545\|emb\|CAA33509.1\| unnamed protein product [Mus sp.] RABP1_RAT - Cellular retinoic acid-binding protein 1 OS=Rattus norvegicus GN=Crabp1 PE=1 SV=3 RABP1_BOVIN - Cellular retinoic acid-binding protein 1 OS=Bos taurus GN=CRABP1 PE=1 SV=2 RABP1_MOUSE - Cellular retinoic acid-binding protein 1 OS=Mus musculus GN=Crabp1 PE=1 SV=2 gi\|239916544 - gi\|239916544\|gb\|ACS34761.1\| cellular retinoic acid binding protein I [Mesocricetus auratus]	186.0	[0..1]	[137..1]
CRABP1 - cellular retinoic acid binding protein 1 ENSPTRT00000013536 - null gi\|149691749 - gi\|149691749\|ref\|XP_001488972.1\| PREDICTED: similar to Cellular retinoic acid-binding protein 1 (Cel... ENSCJAT00000019948 - null gi\|148470135, gi... - gi\|190360581\|ref\|NP_001121964.1\| cellular retinoic acid binding protein 1 [Sus scrofa], gi\|148470135... gi\|109082058 - gi\|109082058\|ref\|XP_001107715.1\| PREDICTED: cellular retinoic acid binding protein 1 [Macaca mulatta...	184.0	[0..1]	[137..1]
gi\|162906, gi\|30... - gi\|30794346\|ref\|NP_851371.1\| cellular retinoic acid binding protein 1 [Bos taurus], gi\|162906\|gb\|AAA...	183.0	[0..1]	[137..1]
gi\|40217926 - gi\|40217926\|gb\|AAR82892.1\| cellular retinoic acid-binding protein; CRABP [Astatotilapia burtoni]	182.0	[0..1]	[137..1]
RABP1_PELSI - Cellular retinoic acid-binding protein 1 OS=Pelodiscus sinensis GN=CRABP1 PE=2 SV=3	181.0	[0..1]	[137..1]

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Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNFAGTWKM RSSENFDELL KALGVNAMLR KVAVAAASKP HVEIRQDGDQ FYIKTSTTVR  60
   61 TTEINFKIGE SFEEETVDGR KCRSLATWEN ENKIYCKQTL IEGDGPKTYW TRELANDELI 120
  121 LTFGADDVVC TRIYVRE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.69897
Match:	1cbiA
Description:	Cellular retinoic-acid-binding protein (CRABP)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits