YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|62079237, gi|...
Organism: Rattus norvegicus
Length: 137 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|62079237, gi|....

Description E-value Query
Range
Subject
Range
gi|52783796 - gi|52783796|sp|P62341|SELT_HUMAN Selenoprotein T precursor
248.0 [0..1] [137..59]
SELT_MOUSE - Selenoprotein T precursor - Mus musculus (Mouse)
SELT_RAT - Selenoprotein T precursor - Rattus norvegicus (Rat)
248.0 [0..1] [137..59]
SELT_MOUSE - Selenoprotein T OS=Mus musculus GN=Selt PE=1 SV=2
SELT_RAT - Selenoprotein T OS=Rattus norvegicus GN=Selt PE=2 SV=2
247.0 [0..1] [137..59]
SELT_CHICK - Selenoprotein T precursor - Gallus gallus (Chicken)
244.0 [0..1] [137..63]
SELT_XENTR - Selenoprotein T precursor - Xenopus tropicalis (Western clawed frog) (Silurana tropicalis)
239.0 [0..1] [135..64]

Back

Predicted Domain #1
Region A:
Residues: [1-54]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVISQRYPD IRIEGENYLP QPIYRHIASF LSVFKLVLIG LIIVGKDPFA FFGM

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [55-137]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QAPSIWQWGQ ENKVYACMMV FFLSNMIENQ CMSTGAFEIT LNDVPVWSKL ESGHLPSMQQ  60
   61 LVQILDNEMK LNVHMDSIPH HRS

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.72
Match: 2okaA
Description: No description for 2okaA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle