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View Structure Prediction Details

Protein: gi|123982225, gi...
Organism: synthetic construct
Length: 210 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123982225, gi....

Description E-value Query
Range
Subject
Range
gi|61368017, gi|... - gi|61368017|gb|AAX43083.1| CDC42 effector protein 2 [synthetic construct], gi|54696868|gb|AAV38806.1...
4.0E-77 [1..210] [1..210]
gi|114638550, gi... - gi|114638552|ref|XP_508550.2| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes], gi|114638...
7.0E-77 [1..210] [1..210]
gi|4323062 - gi|4323062|gb|AAD16185.1| Cdc42 effector protein 2 [Homo sapiens]
5.0E-76 [1..210] [1..210]
gi|109105510, gi... - gi|109105510|ref|XP_001113931.1| PREDICTED: similar to Cdc42 effector protein 2 isoform 2 [Macaca mu...
2.0E-75 [1..210] [1..210]
BORG1_MOUSE - Cdc42 effector protein 2 OS=Mus musculus GN=Cdc42ep2 PE=1 SV=1
1.0E-73 [1..210] [1..214]
BORG1_RAT - Cdc42 effector protein 2 OS=Rattus norvegicus GN=Cdc42ep2 PE=1 SV=1
3.0E-73 [1..210] [1..214]
gi|57100381 - gi|57100381|ref|XP_540865.1| PREDICTED: similar to Cdc42 effector protein 2 [Canis familiaris]
3.0E-71 [1..210] [1..214]
BORG1_BOVIN - Cdc42 effector protein 2 OS=Bos taurus GN=CDC42EP2 PE=2 SV=1
1.0E-69 [1..210] [1..210]

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Predicted Domain #1
Region A:
Residues: [1-146]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTKVPIYLK RGSRKGKKEK LRDLLSSDMI SPPLGDFRHT IHIGSGGGSD MFGDISFLQG  60
   61 KFHLLPGTMV EGPEEDGTFD LPFQFTRTAT VCGRELPDGP SPLLKNAISL PVIGGPQALT 120
  121 LPTAQAPPKP PRLHLETPQP SPQEGG

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 8.769551
Match: PF00786.19
Description: No description for PF00786.19 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [147-210]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVDIWRIPET GSPNSGLTPE SGAEEPFLSN ASSLLSLHVD LGPSILDDVL QIMDQDLDSM  60
   61 QIPT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle