YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|60656499, gi\|...
Organism:	synthetic construct
Length:	87 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|60656499, gi|....

Description	E-value	Query Range	Subject Range
gi\|73948506 - gi\|73948506\|ref\|XP_855497.1\| PREDICTED: similar to FXYD domain-containing ion transport regulator 3 ...	144.0	[0..1]	[87..1]
gi\|114676672 - gi\|114676672\|ref\|XP_001158172.1\| PREDICTED: similar to MAT8 protein isoform 8 [Pan troglodytes]	144.0	[0..1]	[87..54]
FXYD3_PIG - FXYD domain-containing ion transport regulator 3 OS=Sus scrofa GN=FXYD3 PE=3 SV=1	144.0	[0..1]	[86..1]
gi\|60653451, gi\|... - gi\|60653453\|gb\|AAX29421.1\| FXYD domain containing ion transport regulator 3 [synthetic construct], g...	144.0	[0..1]	[87..1]
gi\|109124339 - gi\|109124339\|ref\|XP_001093807.1\| PREDICTED: similar to FXYD domain-containing ion transport regulato...	134.0	[0..1]	[87..1]
gi\|37183070 - gi\|37183070\|gb\|AAQ89335.1\| FXYD6 [Homo sapiens]	134.0	[0..1]	[86..1]
FXYD3_MOUSE - FXYD domain-containing ion transport regulator 3 OS=Mus musculus GN=Fxyd3 PE=2 SV=1	133.0	[0..13]	[87..13]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKVTLGLLV FLAGFPVLDA NDLEDKNSPF YYDWHSLQVG GLICAGVLCA MGIIIVMSAK  60
   61 CKCKFGQKSG HHPGETPPLI TPGSAQS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.69897
Match:	2jo1A
Description:	No description for 2jo1A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits