YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|149038273, gi...
Organism:	Rattus norvegicus
Length:	96 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|149038273, gi....

Description	E-value	Query Range	Subject Range
gi\|56203991, gi\|... - gi\|56204931\|emb\|CAI23309.1\| dynein, light chain, roadblock-type 1 [Homo sapiens], gi\|56203991\|emb\|CA...	172.0	[0..2]	[96..54]
gi\|109129304 - gi\|109129304\|ref\|XP_001111256.1\| PREDICTED: similar to dynein, cytoplasmic, light polypeptide 2B iso...	171.0	[0..2]	[96..31]
gi\|50753873 - gi\|50753873\|ref\|XP_414162.1\| PREDICTED: similar to dynein, cytoplasmic, light chain 2B; dynein, cyto...	169.0	[0..2]	[96..67]
gi\|57087115 - gi\|57087115\|ref\|XP_536771.1\| PREDICTED: similar to dynein, cytoplasmic, light chain 2B [Canis famili... tr\|G1SVF4\|G1SVF4... - Uncharacterized protein OS=Oryctolagus cuniculus GN=DYNLRB2 PE=4 SV=2 DLRB2_BOVIN - Dynein light chain roadblock-type 2 OS=Bos taurus GN=DYNLRB2 PE=3 SV=1	166.0	[0..1]	[96..1]
gi\|126631441, gi... - gi\|148223423\|ref\|NP_001091409.1\| hypothetical protein LOC100049099 [Xenopus laevis], gi\|126631441\|gb... gi\|62858449, gi\|... - gi\|89273745\|emb\|CAJ81425.1\| dynein, cytoplasmic, light polypeptide 2B [Xenopus tropicalis], gi\|62858...	164.0	[0..1]	[96..1]
gi\|19262989, gi\|... - gi\|74096267\|ref\|NP_001027623.1\| roadblock-related dynein light chain [Ciona intestinalis], gi\|192629...	159.0	[0..1]	[96..1]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEVEETLKR IQSHKGVIGT MVVNAEGIPI RTTLDNSTTV QYAGLLHQLT MKAKSTVRDI  60
   61 DPQNDLTFLR IRSKKHEIMV APDKEYLLIV IQNPCE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.39794
Match:	2hz5A
Description:	No description for 2hz5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits