YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|60654967, gi\|...
Organism:	synthetic construct
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|60654967, gi|....

Description	E-value	Query Range	Subject Range
BET1_MOUSE - BET1 homolog OS=Mus musculus GN=Bet1 PE=1 SV=1	9.0E-29	[1..118]	[1..118]
BET1_RAT - BET1 homolog OS=Rattus norvegicus GN=Bet1 PE=1 SV=1	1.0E-28	[1..118]	[1..118]
gi\|57095986 - gi\|57095986\|ref\|XP_532463.1\| PREDICTED: similar to BET1 homolog (Golgi vesicular membrane traffickin...	1.0E-27	[1..118]	[1..118]
gi\|109067483 - gi\|109067483\|ref\|XP_001098215.1\| PREDICTED: BET1 homolog (S. cerevisiae) isoform 3 [Macaca mulatta]	1.0E-27	[1..118]	[1..118]
gi\|148877424, gi... - gi\|76670646\|ref\|XP_873653.1\| PREDICTED: similar to BET1 homolog (Golgi vesicular membrane traffickin...	2.0E-27	[1..118]	[1..118]
gi\|60835318 - gi\|60835318\|gb\|AAX37133.1\| BET1-like [synthetic construct]	2.0E-27	[1..118]	[1..118]
gi\|50732499 - gi\|50732499\|ref\|XP_418664.1\| PREDICTED: similar to Bet1 homolog [Gallus gallus]	6.0E-25	[1..118]	[1..115]
gi\|47222240 - gi\|47222240\|emb\|CAG11119.1\| unnamed protein product [Tetraodon nigroviridis]	6.0E-23	[1..118]	[18..129]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRAGLGEGV PPGNYGNYGY ANSGYSACEE ENERLTESLR SKVTAIKSLS IEIGHEVKTQ  60
   61 NKLLAEMDSQ FDSTTGFLGK TMGKLKILSR GSQTKLLCYM MLFSLFVFFI IYWIIKLR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.30103
Match:	1l4aB
Description:	Syntaxin 1A
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits