YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|123980378, gi...
Organism: synthetic construct
Length: 113 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123980378, gi....

Description E-value Query
Range		 Subject
Range
TYOBP_MOUSE - TYRO protein tyrosine kinase-binding protein OS=Mus musculus GN=Tyrobp PE=1 SV=1
 5.0E-33 [1..113] [1..114]
gi|3450968 - gi|3450968|gb|AAC32617.1| T-cell surface glycoprotein CD3 gamma chain [Marmota monax]
 6.0E-33 [21..113] [56..145]
gi|75911547 - gi|75911547|gb|ABA29629.1| CD3 epsilon [Callithrix jacchus]
 9.0E-33 [21..108] [99..196]
TYOBP_RAT - TYRO protein tyrosine kinase-binding protein OS=Rattus norvegicus GN=Tyrobp PE=3 SV=1
 1.0E-32 [1..113] [1..114]
gi|109108995 - gi|109108995|ref|XP_001093643.1| PREDICTED: similar to T-cell surface glycoprotein CD3 gamma chain p...
 6.0E-32 [22..112] [121..208]
gi|116284362 - gi|116284362|gb|AAH69685.1| AGXT protein [Homo sapiens]
 1.0E-31 [22..112] [48..135]

Back

Predicted Domain #1
Region A:
Residues: [1-113] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGLEPCSRL LLLPLLLAVS GLRPVQAQAQ SDCSCSTVSP GVLAGIVMGD LVLTVLIALA  60
   61 VYFLGRLVPR GRGAAEAATR KQRITETESP YQELQGQRSD VYSDLNTQRP YYK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle