YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|85674554, gi\|...
Organism:	Escherichia coli str. K-12 substr. W3110
Length:	367 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|85674554, gi|....

Description	E-value	Query Range	Subject Range
gi\|75176888, gi\|... - gi\|75176888\|ref\|ZP_00697004.1\| COG1985: Pyrimidine reductase, riboflavin biosynthesis [Shigella boyd...	386.0	[0..1]	[367..1]
gi\|81244313, gi\|... - gi\|82542902\|ref\|YP_406849.1\| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-am...	383.0	[0..1]	[367..1]
gi\|50120065, gi\|... - gi\|50120065\|ref\|YP_049232.1\| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-am...	374.0	[0..2]	[366..3]
gi\|74310983, gi\|... - gi\|74310983\|ref\|YP_309402.1\| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-am...	373.0	[0..1]	[367..1]
gi\|226898802, gi... - gi\|237707592\|ref\|ZP_04538073.1\| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Escherichia s... gi\|117622675, gi... - gi\|117622675\|ref\|YP_851588.1\| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-a... gi\|91209482, gi\|... - gi\|91209482\|ref\|YP_539468.1\| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-am... gi\|218364092, gi... - gi\|218557323\|ref\|YP_002390236.1\| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/...	373.0	[0..1]	[367..1]
gi\|75237204 - gi\|75237204\|ref\|ZP_00721251.1\| COG1985: Pyrimidine reductase, riboflavin biosynthesis [Escherichia c...	373.0	[0..7]	[367..1]
gi\|227838664, gi... - gi\|227884578\|ref\|ZP_04002383.1\| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5... gi\|26246419, gi\|... - gi\|26246419\|ref\|NP_752458.1\| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-am... gi\|218688277, gi... - gi\|218688277\|ref\|YP_002396489.1\| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/... gi\|190906223, gi... - gi\|191173514\|ref\|ZP_03035041.1\| riboflavin biosynthesis protein RibD [Escherichia coli F11], gi\|1909...	373.0	[0..1]	[367..1]
gi\|75230139 - gi\|75230139\|ref\|ZP_00716643.1\| COG1985: Pyrimidine reductase, riboflavin biosynthesis [Escherichia c...	373.0	[0..7]	[367..1]
gi\|30061909, gi\|... - gi\|30061909\|ref\|NP_836080.1\| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-am... gi\|24111792, gi\|... - gi\|24111792\|ref\|NP_706302.1\| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-am...	372.0	[0..1]	[367..1]
gi\|82775681, gi\|... - gi\|82775681\|ref\|YP_402028.1\| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-am...	372.0	[0..1]	[367..1]

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Predicted Domain #1

Region A:
Residues: [1-367]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQDEYYMARA LKLAQRGRFT THPNPNVGCV IVKDGEIVGE GYHQRAGEPH AEVHALRMAG  60
   61 EKAKGATAYV TLEPCSHHGR TPPCCDALIA AGVARVVASM QDPNPQVAGR GLYRLQQAGI 120
  121 DVSHGLMMSE AEQLNKGFLK RMRTGFPYIQ LKLGASLDGR TAMASGESQW ITSPQARRDV 180
  181 QLLRAQSHAI LTSSATVLAD DPALTVRWSE LDEQTQALYP QQNLRQPIRI VIDSQNRVTP 240
  241 VHRIVQQPGE TWFARTQEDS REWPETVRTL LIPEHKGHLD LVVLMMQLGK QQINSIWVEA 300
  301 GPTLAGALLQ AGLVDELIVY IAPKLLGSDA RGLCTLPGLE KLADAPQFKF KEIRHVGPDV 360
  361 CLHLVGA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	108.0
Match:	2g6vA
Description:	No description for 2g6vA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits