YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|56808858
Organism:	Streptococcus pyogenes M49 591
Length:	123 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|56808858.

Description	E-value	Query Range	Subject Range
gi\|94541147, gi\|... - gi\|94987639\|ref\|YP_595740.1\| cell division protein [Streptococcus pyogenes MGAS9429], gi\|94541147\|gb... gi\|94991505, gi\|... - gi\|94991505\|ref\|YP_599604.1\| cell division protein DIVIC [Streptococcus pyogenes MGAS2096], gi\|94545... gi\|71902675, gi\|... - gi\|71902675\|ref\|YP_279478.1\| cell division protein [Streptococcus pyogenes MGAS6180], gi\|71801770\|gb...	122.0	[0..1]	[123..1]

Back

Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKPSIVQLN NHYIKKENLK KKFEEEESQK RNRFMGWILV SMMFLFILPT YNLVKSYVDF  60
   61 EKQNQQVVKL KKEYNELSKS TKKEKQLAER LKDDNFVKKY ARAKYYLSRE GEMIYPIPGL 120
  121 LPK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.963
Match:	1hjbA
Description:	C/ebp beta
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits