YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|61359547, gi\|...
Organism:	synthetic construct
Length:	123 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|61359547, gi|....

Description	E-value	Query Range	Subject Range
gi\|61369643, gi\|... - gi\|61369656\|gb\|AAX43367.1\| RAB interacting factor [synthetic construct], gi\|61369649\|gb\|AAX43366.1\| ...	225.0	[0..1]	[123..1]
gi\|2135758, gi\|1... - pir\|\|I52427 guanine-nucleotide-releasing protein Mss4 - human, gi\|10835450\|pdb\|1FWQ\|A Chain A, Solu...	225.0	[0..1]	[123..1]
gi\|114571866 - gi\|114571866\|ref\|XP_514105.2\| PREDICTED: RAB-interacting factor [Pan troglodytes] gi\|109018839 - gi\|109018839\|ref\|XP_001106028.1\| PREDICTED: similar to RAB-interacting factor [Macaca mulatta]	223.0	[0..1]	[123..1]
MSS4_MOUSE - Guanine nucleotide exchange factor MSS4 OS=Mus musculus GN=Rabif PE=1 SV=1	220.0	[0..1]	[123..1]
gi\|73960247 - gi\|73960247\|ref\|XP_537120.2\| PREDICTED: similar to RAB-interacting factor [Canis familiaris]	218.0	[0..1]	[123..1]
MSS4_RAT - Guanine nucleotide exchange factor MSS4 OS=Rattus norvegicus GN=Rabif PE=1 SV=1	215.0	[0..1]	[123..1]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPAEQPSEL VSAEGRNRKA VLCQRCGSRV LQPGTALFSR RQLFLPSMRK KPALSDGSNP  60
   61 DGDLLQEHWL VEDMFIFENV GFTKDVGNIK FLVCADCEIG PIGWHCLDDK NSFYVALERV 120
  121 SHE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.522879
Match:	1fwqA
Description:	RabGEF Mss4
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits