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View Structure Prediction Details

Protein: gi|60683750, gi|...
Organism: Bacteroides fragilis NCTC 9343
Length: 230 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|60683750, gi|....

Description E-value Query
Range
Subject
Range
gi|251841190, gi... - gi|253569171|ref|ZP_04846581.1| conserved hypothetical protein [Bacteroides sp. 1_1_6], gi|251841190...
gi|29340366, gi|... - gi|29348462|ref|NP_811965.1| putative cytochrome B subunit [Bacteroides thetaiotaomicron VPI-5482], ...
216.0 [0..1] [229..1]

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Predicted Domain #1
Region A:
Residues: [1-230]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWLSNSSVGR KVVMSVTGIA LVLFLTFHMA MNLVAIISAE GYNLVCEFLG ANWYALVATL  60
   61 GLAALFVIHI IYAFWLTIQN RAARGSERYA VVDKPKTVEW ASQNMLVLGI IVILGLGLHL 120
  121 FNFWAKMQLP ELVHNMGGVA DTTYAADGVY HIMNTFSNPV YVVLYLVWLG ALWFHLTHGF 180
  181 WSSMQSLGWN NKIWINRWKC ISNIYSTIVV VCFALVVVVF FVKSLACGAC 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 7.18
Match: 1qlbC
Description: Fumarate reductase respiratory complex cytochrome b subunit, FrdC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
succinate dehydrogenase activity 9.98683509225783 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors 7.56400635334124 bayes_pls_golite062009
oxidoreductase activity 5.79163180464915 bayes_pls_golite062009
electron carrier activity 4.16757432586645 bayes_pls_golite062009
catalytic activity 0.916346296983561 bayes_pls_golite062009
binding 0.1167544383299 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle