YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|60493498, gi|...
Organism: Bacteroides fragilis NCTC 9343
Length: 253 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|60493498, gi|....

Description E-value Query
Range
Subject
Range
gi|29337934, gi|... - gi|29346040|ref|NP_809543.1| exodeoxyribonuclease [Bacteroides thetaiotaomicron VPI-5482], gi|293379...
263.0 [0..1] [252..1]

Back

Predicted Domain #1
Region A:
Residues: [1-253]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIITYNVNG LRAAVNKGLP EWLAEENPDV LCLQETKLQP EQYPAEAFEA LGYKAYLYSA  60
   61 QKKGYSGVAI LTKVEPDHIE YGMGIEEYDN EGRFIRADFG DLSVVSVYHP SGTSGDERQA 120
  121 FKMVWLEAFQ KYVTELRKSR PNLILCGDYN ICHEPIDIHD PVRNATNSGF LPEEREWMTR 180
  181 FLSAGFIDSF RTLYPQKQEY TWWSYRFNSR AKNKGWRIDY CMVSEPVRSL LKEAVILNNA 240
  241 VHSDHCPMAL EIG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 61.0
Match: 2jc5A
Description: No description for 2jc5A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle