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View Structure Prediction Details

Protein: gi|60493379, gi|...
Organism: Bacteroides fragilis NCTC 9343
Length: 294 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|60493379, gi|....

Description E-value Query
Range
Subject
Range
gi|78221930, gi|... - gi|78221930|ref|YP_383677.1| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [Geoba...
313.0 [0..1] [294..1]

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Predicted Domain #1
Region A:
Residues: [1-294]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKIKVGIIQ QANTSDIRIN LMNLAKSIEA CAANGAQLVV LQELHNSLYF CQTENTDLFE  60
   61 LAEPIPGPST GFYSELAAAN RIVLVTSLFE KRAPGLYHNT AVVFDRDGSI AGKYRKMHIP 120
  121 DDPAYYEKFY FTPGDIGFEP IQTSLGKLGV LVCWDQWYPE AARLMALKGA EILIYPTAIG 180
  181 WESTDTDDEK KRQLNAWIIS QRAHAVANGL PVISVNRVGH EPDPSGQTNG ILFWGNSFVA 240
  241 GPQGEYLAQA GNDRSENMIV EVDLERSENV RRWWPFLRDR RIDEYGNLTK RFID

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 59.522879
Match: 1f89A
Description: hypothetical protein yl85
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 2.08563993959019 bayes_pls_golite062009
catalytic activity 1.64442398754697 bayes_pls_golite062009
binding 1.58491015879508 bayes_pls_golite062009
N-carbamoylputrescine amidase activity 0.749539597459006 bayes_pls_golite062009
protein binding 0.276768866737717 bayes_pls_golite062009
hydrolase activity 0.06604196264626 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle