YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|56415951, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
Length:	296 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|56415951, gi|....

Description	E-value	Query Range	Subject Range
METF_ERWCA - (P71319) 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) METF_PECCC - 5,10-methylenetetrahydrofolate reductase OS=Pectobacterium carotovorum subsp. carotovorum GN=metF PE...	0.0	[1..296]	[1..296]
gi\|238912253 - gi\|238912253\|ref\|ZP_04656090.1\| 5,10-methylenetetrahydrofolate reductase [Salmonella enterica subsp.... lcl\|NC_016856.1_... - [gene=metF] [protein=5,10-methylenetetrahydrofolate reductase] [protein_id=YP_005240388.1] [location... gi\|205323684, gi... - gi\|205323684\|gb\|EDZ11523.1\| 5,10-methylenetetrahydrofolate reductase [Salmonella enterica subsp. ent... gi\|160866743, gi... - gi\|161505396\|ref\|YP_001572508.1\| 5,10-methylenetetrahydrofolate reductase [Salmonella enterica subsp... METF_SALTY - 5,10-methylenetetrahydrofolate reductase OS=Salmonella typhimurium GN=metF PE=3 SV=2 METF_SALTY - 5,10-methylenetetrahydrofolate reductase OS=Salmonella typhimurium GN=metF PE=3 SV=2 gi\|197241124, gi... - gi\|197262869\|ref\|ZP_03162943.1\| 5,10-methylenetetrahydrofolate reductase [Salmonella enterica subsp.... METF_SALTY - 5,10-methylenetetrahydrofolate reductase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700... gi\|197251038, gi... - gi\|197251038\|ref\|YP_002149035.1\| 5,10-methylenetetrahydrofolate reductase [Salmonella enterica subsp... gi\|167991684, gi... - gi\|205330073\|gb\|EDZ16837.1\| 5,10-methylenetetrahydrofolate reductase [Salmonella enterica subsp. ent...	0.0	[1..296]	[1..296]
gi\|50123164, gi\|... - gi\|50123164\|ref\|YP_052331.1\| 5,10-methylenetetrahydrofolate reductase [Pectobacterium atrosepticum S...	0.0	[1..296]	[1..296]
gi\|209401006, gi... - gi\|209401006\|ref\|YP_002273464.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli O157:H7 ... gi\|217322146, gi... - gi\|217325925\|ref\|ZP_03442009.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli O157:H7 s... gi\|195937592 - gi\|195937592\|ref\|ZP_03082974.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli O157:H7 s... gi\|208809405, gi... - gi\|208809405\|ref\|ZP_03251742.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli O157:H7 s... gi\|208812383, gi... - gi\|208812383\|ref\|ZP_03253712.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli O157:H7 s... gi\|208740595, gi... - gi\|208820472\|ref\|ZP_03260792.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli O157:H7 s... gi\|168775214, gi... - gi\|187769131\|gb\|EDU32975.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli O157:H7 str. ... gi\|254795947, gi... - gi\|254795947\|ref\|YP_003080784.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli O157:H7 ... gi\|168780869, gi... - gi\|189001450\|gb\|EDU70436.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli O157:H7 str. ... gi\|13364346, gi\|... - gi\|15834124\|ref\|NP_312897.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli O157:H7], gi... gi\|189373373, gi... - gi\|189373373\|gb\|EDU91789.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli O157:H7 str. ... gi\|209752156, gi... - pir\|\|B86085 5,10-methylenetetrahydrofolate reductase [imported] - Escherichia coli (strain O157:H7, ... gi\|189378095, gi... - gi\|189378095\|gb\|EDU96511.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli O157:H7 str. ... gi\|13364346, gi\|... - gi\|15834124\|ref\|NP_312897.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli O157:H7 str.... gi\|188016841, gi... - gi\|188016841\|gb\|EDU54963.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli O157:H7 str. ... gi\|15804538, gi\|... - gi\|15804538\|ref\|NP_290578.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli O157:H7 EDL9... gi\|168755636, gi... - gi\|189357126\|gb\|EDU75545.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli O157:H7 str. ... gi\|168761666, gi... - gi\|189367866\|gb\|EDU86282.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli O157:H7 str. ... gi\|189362673, gi... - gi\|189362673\|gb\|EDU81092.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli O157:H7 str. ...	0.0	[1..296]	[1..296]
gi\|110807801, gi... - gi\|110807801\|ref\|YP_691321.1\| 5,10-methylenetetrahydrofolate reductase [Shigella flexneri 5 str. 840... gi\|124501308, gi... - gi\|124527606\|ref\|ZP_01699071.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli B], gi\|12... METF_SHIFL - 5,10-methylenetetrahydrofolate reductase OS=Shigella flexneri GN=metF PE=3 SV=1 gi\|24054522, gi\|... - gi\|24115235\|ref\|NP_709745.1\| 5,10-methylenetetrahydrofolate reductase [Shigella flexneri 2a str. 301... gi\|30043026, gi\|... - gi\|30064766\|ref\|NP_838937.1\| 5,10-methylenetetrahydrofolate reductase [Shigella flexneri 2a str. 245... EG10585 - 5,10-methylenetetrahydrofolate reductase / 5,10-Methylenetetrahydrofolate reductase EG10585 - 5,10-methylenetetrahydrofolate reductase / 5,10-Methylenetetrahydrofolate reductase gi\|169756974, gi... - gi\|170022046\|ref\|YP_001727000.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli ATCC 873... gi\|169891246, gi... - gi\|170083411\|ref\|YP_001732731.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli str. K-1... gi\|209914685, gi... - gi\|209921426\|ref\|YP_002295510.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli SE11], g... gi\|218358608, gi... - gi\|218551067\|ref\|YP_002384858.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia fergusonii AT... gi\|218556503, gi... - gi\|218556503\|ref\|YP_002389417.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli IAI1], g... gi\|188493110, gi... - gi\|75513872\|ref\|ZP_00736225.1\| COG0685: 5,10-methylenetetrahydrofolate reductase [Escherichia coli 5... gi\|74314446, gi\|... - gi\|74314446\|ref\|YP_312865.1\| 5,10-methylenetetrahydrofolate reductase [Shigella sonnei Ss046], gi\|73... gi\|192958604, gi... - gi\|75238387\|ref\|ZP_00722386.1\| COG0685: 5,10-methylenetetrahydrofolate reductase [Escherichia coli E... gi\|75258074, gi\|... - gi\|75258074\|ref\|ZP_00729535.1\| COG0685: 5,10-methylenetetrahydrofolate reductase [Escherichia coli E... gi\|85676119, gi\|... - gi\|89110088\|ref\|AP_003868.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli str. K-12 su... gi\|83586214, gi\|... - gi\|83586214\|ref\|ZP_00924850.1\| COG0685: 5,10-methylenetetrahydrofolate reductase [Escherichia coli 1... METF_ECOLI - 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) - Escherichia coli gi\|75176669, gi\|... - gi\|75176669\|ref\|ZP_00696797.1\| COG0685: 5,10-methylenetetrahydrofolate reductase [Shigella boydii BS... gi\|194418518, gi... - gi\|83569790\|ref\|ZP_00921239.1\| COG0685: 5,10-methylenetetrahydrofolate reductase [Shigella dysenteri... gi\|194429417, gi... - gi\|75209372\|ref\|ZP_00709608.1\| COG0685: 5,10-methylenetetrahydrofolate reductase [Escherichia coli B... gi\|190901030, gi... - gi\|75227810\|ref\|ZP_00714528.1\| COG0685: 5,10-methylenetetrahydrofolate reductase [Escherichia coli B... gi\|157079280, gi... - gi\|75188679\|ref\|ZP_00701946.1\| COG0685: 5,10-methylenetetrahydrofolate reductase [Escherichia coli E... gi\|157163418, gi... - gi\|75197814\|ref\|ZP_00707884.1\| COG0685: 5,10-methylenetetrahydrofolate reductase [Escherichia coli H... gi\|254163892, gi... - gi\|254163892\|ref\|YP_003047000.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli B str. R... gi\|253775419, gi... - gi\|254290643\|ref\|YP_003056391.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli BL21(DE3... gi\|242379478, gi... - gi\|251787205\|ref\|YP_003001509.1\| hypothetical protein B21_03776 [Escherichia coli BL21], gi\|24237947... gi\|238903007, gi... - gi\|238903007\|ref\|YP_002928803.1\| 5,10-methylenetetrahydrofolate reductase [Escherichia coli BW2952],...	0.0	[1..296]	[1..296]
gi\|75765880, gi\|... - gi\|75765880\|pdb\|1ZRQ\|C Chain C, Escherichia Coli Methylenetetrahydrofolate Reductase (Reduced) Compl...	0.0	[1..296]	[1..296]
gi\|82546293, gi\|... - gi\|82546293\|ref\|YP_410240.1\| 5,10-methylenetetrahydrofolate reductase [Shigella boydii Sb227], gi\|81...	0.0	[1..296]	[1..296]
gi\|16504633, gi\|... - gi\|25285412\|pir\|\|AB0937 5,10 methylenetetrahydrofolate reductase [imported] - Salmonella enterica su... gi\|16762329 - gi\|16762329\|ref\|NP_457946.1\| 5,10-methylenetetrahydrofolate reductase [Salmonella enterica subsp. en...	0.0	[1..296]	[1..296]
gi\|81243012, gi\|... - gi\|82778864\|ref\|YP_405213.1\| 5,10-methylenetetrahydrofolate reductase [Shigella dysenteriae Sd197], ...	0.0	[1..296]	[1..296]
gi\|47779\|emb\|CAA... - unnamed protein product [Salmonella typhimurium] gi\|47779 - gi\|47779\|emb\|CAA30531.1\| unnamed protein product [Salmonella typhimurium]	0.0	[1..296]	[1..296]

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Predicted Domain #1

Region A:
Residues: [1-296]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFFHANQRE ALNQSLAEVQ GQINVSFEFF PPRTSEMEQT LWNSIDRLSS LKPKFVSVTY  60
   61 GANSGERDRT HSVIKGIKER TGLEAAPHLT CIDATRDELR TIARDYWNNG IRHIVALRGD 120
  121 LPPGSGKPEM YAADLVGLLK EVADFDISVA AYPEVHPEAK SAQADLLNLK RKVDAGANRA 180
  181 ITQFFFDVES YLRFRDRCVS AGIDVEIIPG ILPVSNFKQA KKFADMTNVR IPSWMSLMFE 240
  241 GLDDDAETRK LVGANIAMDM VKILSREGVK DFHFYTLNRA EMSYAICHTL GVRPGL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	118.0
Match:	1zp3A
Description:	E. coli Methylenetetrahydrofolate Reductase (oxidized)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits