YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|62180016, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
Length:	382 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|62180016, gi|....

Description	E-value	Query Range	Subject Range
gi\|56413604, gi\|... - gi\|56413604\|ref\|YP_150679.1\| cyclopropane fatty acyl phospholipid synthase [Salmonella enterica subs...	5.0E-84	[1..382]	[1..382]
gi\|81241285, gi\|... - gi\|82777137\|ref\|YP_403486.1\| cyclopropane fatty acyl phospholipid synthase [Shigella dysenteriae Sd1...	1.0E-81	[1..382]	[1..382]
gi\|24113051, gi\|... - gi\|24113051\|ref\|NP_707561.1\| cyclopropane fatty acyl phospholipid synthase [Shigella flexneri 2a str... gi\|30063177, gi\|... - gi\|30063177\|ref\|NP_837348.1\| cyclopropane fatty acyl phospholipid synthase [Shigella flexneri 2a str... gi\|110805639, gi... - gi\|110805639\|ref\|YP_689159.1\| cyclopropane fatty acyl phospholipid synthase [Shigella flexneri 5 str...	2.0E-81	[1..382]	[1..382]
gi\|209769350, gi... - pir\|\|F85773 cyclopropane fatty acyl phospholipid synthase [imported] - Escherichia coli (strain O157... gi\|15802075, gi\|... - gi\|15802075\|ref\|NP_288097.1\| cyclopropane fatty acyl phospholipid synthase [Escherichia coli O157:H7... gi\|15831624, gi\|... - gi\|15831624\|ref\|NP_310397.1\| cyclopropane fatty acyl phospholipid synthase [Escherichia coli O157:H7... gi\|15831624, gi\|... - gi\|15831624\|ref\|NP_310397.1\| cyclopropane fatty acyl phospholipid synthase [Escherichia coli O157:H7... gi\|208816625, gi... - gi\|208816625\|ref\|ZP_03257745.1\| cyclopropane-fatty-acyl-phospholipid synthase [Escherichia coli O157... gi\|208740600, gi... - gi\|208820477\|ref\|ZP_03260797.1\| cyclopropane-fatty-acyl-phospholipid synthase [Escherichia coli O157... gi\|209395995, gi... - gi\|209395995\|ref\|YP_002270731.1\| cyclopropane-fatty-acyl-phospholipid synthase [Escherichia coli O15... gi\|217318007, gi... - gi\|217328660\|ref\|ZP_03444741.1\| cyclopropane-fatty-acyl-phospholipid synthase [Escherichia coli O157... gi\|168771674, gi... - gi\|189359635\|gb\|EDU78054.1\| cyclopropane-fatty-acyl-phospholipid synthase [Escherichia coli O157:H7 ... gi\|188998793, gi... - gi\|188998793\|gb\|EDU67779.1\| cyclopropane-fatty-acyl-phospholipid synthase [Escherichia coli O157:H7 ... gi\|195940241 - gi\|195940241\|ref\|ZP_03085623.1\| cyclopropane fatty acyl phospholipid synthase [Escherichia coli O157... gi\|208810458, gi... - gi\|208810458\|ref\|ZP_03252334.1\| cyclopropane-fatty-acyl-phospholipid synthase [Escherichia coli O157... gi\|168752348, gi... - gi\|188013785\|gb\|EDU51907.1\| cyclopropane-fatty-acyl-phospholipid synthase [Escherichia coli O157:H7 ... gi\|254592680, gi... - gi\|254793280\|ref\|YP_003078117.1\| cyclopropane fatty acyl phospholipid synthase (unsaturated-phosphol...	3.0E-81	[1..382]	[1..382]
gi\|110343376, gi... - gi\|110641784\|ref\|YP_669514.1\| cyclopropane fatty acyl phospholipid synthase [Escherichia coli 536], ... gi\|89108503, gi\|... - gi\|89108503\|ref\|AP_002283.1\| cyclopropane fatty acyl phospholipid synthase [Escherichia coli str. K-... gi\|91072449, gi\|... - gi\|91210875\|ref\|YP_540861.1\| cyclopropane fatty acyl phospholipid synthase [Escherichia coli UTI89],... gi\|254161724, gi... - gi\|254161724\|ref\|YP_003044832.1\| cyclopropane fatty acyl phospholipid synthase (unsaturated-phosphol... gi\|253773380, gi... - gi\|254288513\|ref\|YP_003054261.1\| cyclopropane fatty acyl phospholipid synthase (unsaturated-phosphol... gi\|238900878, gi... - gi\|238900878\|ref\|YP_002926674.1\| cyclopropane fatty acyl phospholipid synthase (unsaturated-phosphol... gi\|226900366, gi... - gi\|237705609\|ref\|ZP_04536090.1\| cyclopropane fatty acyl phospholipid synthase [Escherichia sp. 3_2_5... gi\|227837100, gi... - gi\|227885921\|ref\|ZP_04003726.1\| cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholi... gi\|117623843, gi... - gi\|117623843\|ref\|YP_852756.1\| cyclopropane fatty acyl phospholipid synthase [Escherichia coli APEC O... gi\|169889158, gi... - gi\|170081323\|ref\|YP_001730643.1\| cyclopropane fatty acyl phospholipid synthase (unsaturated-phosphol... gi\|170682135, gi... - gi\|170682135\|ref\|YP_001743591.1\| cyclopropane-fatty-acyl-phospholipid synthase [Escherichia coli SMS... gi\|215486838, gi... - gi\|215486838\|ref\|YP_002329269.1\| cyclopropane fatty acyl phospholipid synthase [Escherichia coli O12... gi\|218365301, gi... - gi\|218558532\|ref\|YP_002391445.1\| cyclopropane fatty acyl phospholipid synthase [Escherichia coli S88... gi\|218427170, gi... - gi\|218689606\|ref\|YP_002397818.1\| cyclopropane fatty acyl phospholipid synthase [Escherichia coli ED1... gi\|218369757, gi... - gi\|218699771\|ref\|YP_002407400.1\| cyclopropane fatty acyl phospholipid synthase [Escherichia coli IAI... gi\|190906310, gi... - gi\|75238780\|ref\|ZP_00722764.1\| COG2230: Cyclopropane fatty acid synthase and related methyltransfera... gi\|188489571, gi... - gi\|75512905\|ref\|ZP_00735386.1\| COG2230: Cyclopropane fatty acid synthase and related methyltransfera... gi\|194440069, gi... - gi\|83584598\|ref\|ZP_00923268.1\| COG2230: Cyclopropane fatty acid synthase and related methyltransfera... gi\|75195740, gi\|... - gi\|75195740\|ref\|ZP_00705810.1\| COG2230: Cyclopropane fatty acid synthase and related methyltransfera... gi\|73855489, gi\|... - gi\|74312012\|ref\|YP_310431.1\| cyclopropane fatty acyl phospholipid synthase [Shigella sonnei Ss046], ... CFA_ECOL6 - Cyclopropane-fatty-acyl-phospholipid synthase OS=Escherichia coli O6 GN=cfa PE=3 SV=2 CFA_ECOLI - Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79) (Cyclopropane fatty acid synthase) (CFA ... CFA_ECOL6 - Cyclopropane-fatty-acyl-phospholipid synthase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928... EG11531 - cyclopropane fatty acyl phospholipid synthase, SAM-dependent / Cyclopropane fatty acid synthase; CFA... EG11531 - cyclopropane fatty acyl phospholipid synthase, SAM-dependent / Cyclopropane fatty acid synthase; CFA...	3.0E-81	[1..382]	[1..382]
gi\|194425906, gi... - gi\|75212997\|ref\|ZP_00712995.1\| COG2230: Cyclopropane fatty acid synthase and related methyltransfera... gi\|209918976, gi... - gi\|209918976\|ref\|YP_002293060.1\| cyclopropane fatty acyl phospholipid synthase [Escherichia coli SE1... gi\|157155437, gi... - gi\|75190700\|ref\|ZP_00703967.1\| COG2230: Cyclopropane fatty acid synthase and related methyltransfera... gi\|218554229, gi... - gi\|218554229\|ref\|YP_002387142.1\| cyclopropane fatty acyl phospholipid synthase [Escherichia coli IAI... gi\|218351956, gi... - gi\|218695224\|ref\|YP_002402891.1\| cyclopropane fatty acyl phospholipid synthase [Escherichia coli 559... gi\|193064956, gi... - gi\|75257080\|ref\|ZP_00728640.1\| COG2230: Cyclopropane fatty acid synthase and related methyltransfera... gi\|75230891, gi\|... - gi\|75230891\|ref\|ZP_00717340.1\| COG2230: Cyclopropane fatty acid synthase and related methyltransfera... gi\|193071596, gi... - gi\|75214855\|ref\|ZP_00713338.1\| COG2230: Cyclopropane fatty acid synthase and related methyltransfera...	4.0E-81	[1..382]	[1..382]
gi\|187427943, gi... - gi\|75175188\|ref\|ZP_00695506.1\| COG2230: Cyclopropane fatty acid synthase and related methyltransfera... gi\|82543969, gi\|... - gi\|82543969\|ref\|YP_407916.1\| cyclopropane fatty acyl phospholipid synthase [Shigella boydii Sb227], ...	3.0E-80	[1..382]	[1..382]
gi\|36785930, gi\|... - gi\|37526499\|ref\|NP_929843.1\| cyclopropane fatty acyl phospholipid synthase [Photorhabdus luminescens...	1.0E-78	[1..382]	[1..383]
gi\|77959196 - gi\|77959196\|ref\|ZP_00823218.1\| COG2230: Cyclopropane fatty acid synthase and related methyltransfera...	1.0E-76	[1..382]	[1..383]
gi\|108807730, gi... - gi\|108807730\|ref\|YP_651646.1\| cyclopropane fatty acyl phospholipid synthase [Yersinia pestis Antiqua... gi\|229680653, gi... - gi\|229902318\|ref\|ZP_04517438.1\| cyclopropane-fatty-acyl-phospholipid synthase [Yersinia pestis Nepal... gi\|89103802, gi\|... - gi\|89103802\|ref\|ZP_01176366.1\| COG2230: Cyclopropane fatty acid synthase and related methyltransfera... gi\|167056092, gi... - gi\|167424905\|ref\|ZP_02316658.1\| cyclopropane-fatty-acyl-phospholipid synthase [Yersinia pestis biova... gi\|229837915, gi... - gi\|229837915\|ref\|ZP_04458074.1\| cyclopropane-fatty-acyl-phospholipid synthase [Yersinia pestis biova... gi\|149292112, gi... - gi\|149365699\|ref\|ZP_01887734.1\| cyclopropane-fatty-acyl-phospholipid synthase [Yersinia pestis CA88-... gi\|166958984, gi... - gi\|167422172\|ref\|ZP_02313925.1\| cyclopropane-fatty-acyl-phospholipid synthase [Yersinia pestis biova... gi\|229688522, gi... - gi\|229898478\|ref\|ZP_04513624.1\| cyclopropane-fatty-acyl-phospholipid synthase [Yersinia pestis biova... gi\|145598060, gi... - gi\|145598060\|ref\|YP_001162136.1\| cyclopropane fatty acyl phospholipid synthase [Yersinia pestis Pest... gi\|170024097, gi... - gi\|170024097\|ref\|YP_001720602.1\| cyclopropane fatty acyl phospholipid synthase [Yersinia pseudotuber... gi\|167469399 - gi\|167469399\|ref\|ZP_02334103.1\| cyclopropane-fatty-acyl-phospholipid synthase [Yersinia pestis FV-1] Q66A29\|Q66A29_YERPS - Cyclopropane-fatty-acyl-phospholipid synthase - Yersinia pseudotuberculosis gi\|186895683, gi... - gi\|186895683\|ref\|YP_001872795.1\| cyclopropane fatty acyl phospholipid synthase [Yersinia pseudotuber... gi\|22125839, gi\|... - gi\|22125839\|ref\|NP_669262.1\| cyclopropane fatty acyl phospholipid synthase [Yersinia pestis KIM], gi... gi\|25300078 - pir\|\|AG0291 cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79) [imported] - Yersinia pestis... gi\|153950563, gi... - gi\|77629374\|ref\|ZP_00791960.1\| COG2230: Cyclopropane fatty acid synthase and related methyltransfera... gi\|218929481, gi... - gi\|218929481\|ref\|YP_002347356.1\| cyclopropane fatty acyl phospholipid synthase [Yersinia pestis CO92... gi\|51596627, gi\|... - gi\|51596627\|ref\|YP_070818.1\| cyclopropane fatty acyl phospholipid synthase [Yersinia pseudotuberculo... gi\|166010648, gi... - gi\|166010648\|ref\|ZP_02231546.1\| cyclopropane-fatty-acyl-phospholipid synthase [Yersinia pestis biova... gi\|165926413, gi... - gi\|165926413\|ref\|ZP_02222245.1\| cyclopropane-fatty-acyl-phospholipid synthase [Yersinia pestis biova... gi\|167049724, gi... - gi\|167400871\|ref\|ZP_02306377.1\| cyclopropane-fatty-acyl-phospholipid synthase [Yersinia pestis biova... gi\|166210741, gi... - gi\|166210741\|ref\|ZP_02236776.1\| cyclopropane-fatty-acyl-phospholipid synthase [Yersinia pestis biova...	1.0E-76	[1..382]	[1..383]

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Predicted Domain #1

Region A:
Residues: [1-315]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSCIEEVS VPDDNWYRIA NELLSRADIT INGSAPSDIR VKNPDFFKRV LQEGSLGLGE  60
   61 SYMDGWWECE RLDIFFSKVL RAGLENQLPH HVKDTLRILG ARLINLQSKK RAWIVGKEHY 120
  121 DLGNDLFSRM LDPYMQYSCA YWKDADTLEA AQQAKLKLIC EKLQLQPGMR VLDIGCGWGG 180
  181 LSQYMATHYG VSVVGVTISA EQQKMAQTRC EGLDVSILLE DYRDLNDQFD RIVSVGMFEH 240
  241 VGPKNYNTYF EVVDRNLKPD GLFLLHTIGS KKTDHNVDPW INKYIFPNGC LPSVRQIAEA 300
  301 SESHFVMEDW HNFGA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.221849
Match:	1kywA
Description:	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.62377578202456	bayes_pls_golite062009
transferase activity	1.20063885869845	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	1.14636302691827	bayes_pls_golite062009
methyltransferase activity	1.12602040164126	bayes_pls_golite062009
transcription factor activity	1.06343802718818	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	0.535429947810431	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [316-382]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DYDTTLMAWH ERFINAWPEI AGNYNERFKR MFSYYLNACA GAFRARDIQL WQVVFTRGVE  60
   61 NGLRVPR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.81
Match:	1kpiA
Description:	CmaA1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: